Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01817 ATGGCATTTCACGTAGCTTGTCCAATTACATGTCGTCGAATCTGTTTCTGTGCGCTAGGGTTTCCTCGCGGGGTTCAAGCTTCTGACGACGGTTCCGCTGCCAATGGCTTTACTCAGGACGTCGGCGAGCTTTGGGATTTTCTTGCCGACACATGCAGGGACGATGCTACCGTTCAGGTTTCTGTCCCCAAGGTTCTGCCGCCGCCTCCGCCGCCGCCTGACGGTCTTCCTCTCAACGCCGACGCGCTGGATGAATCTGCCTCCATGAAGGCCAAGCGCATCGCGCTACAGCGGAAGGGCGCCGCCGCCATGATCGCCGCCGAGGAGTACGCCCGCCGCTTTGAGTCTGGCGACGTTGTGAATACTCCAGGAAATGTTACCGGAGAGGAGCAGGGGCAAGCCAATAGGAGCTATTGTCGAATTTGCAAGTGCGGGGAGAATGAAGGAAGTGAGAAAGCTCAGAAGATGCTGTCGTGCAAAAGTTGTAGTAAAAAGTACCACAGGAACTGCTTGAGAAGTTGGGGTCGAAATAGAGATTTATTTCATTGGAGTTCATGGACCTGTCCTCTTTGCCGAATTTGTGAGGCTTGCAGAAGGACTGGTGATCCAAGTAAGTTCATGTTTTGCAAAAGGTGCGACGGTGCTTATCATTGTTACTGTCTGCAACCTCCTCATAAGAGTGTTTGTAACGGGCCCTATTTGTGCACAAAACACGCAAGGTGTCACAGTTGTGGGTCAAATGTCCCTGGAAATGGATTAAGTGTGAGGTGGTTTATGGCATACACAAACTGCGATGCATGTGGAAGATTGTTTACAAAAGGGAACTACTGTCCCGTTTGCTTGAAGGTCTACAGAGATTCAGAATCAACACCTATGGTTTGCTGTGATACTTGCCAGCTTTGGGTACATTGTCAGTGTGATAATATCAGTGATGAAAAATATCACCAGTTTCAAGTGGATGGGAATTTGCAGTATAAATGTCCTACTTGTCGTGGGGAATGTTATCAGGTCAAGAATCCTGAAGATGCCGCACAAGAGATTTGGAGGAGAAGGAATGTTGCTGAGAAAGATTTGATTGCTAGCTTGAGGGCTGCAGCTGGTTTGCCCACTCAAGACGAGATATTTTCCATTTCACCATTTTCAGATGATGAGGATAGTGGGCCTTTAAAATTAAAGAGTGAATATACCCGTTCCTTTAAGTTCTCTCTGAAGAATTTGTCCAATGACTCACCAAAGAAGAAATCTTCAAGCAAAAAAACTGCTAAGAGAAAAGACTCTGAGTCATTTATGACTAATAAAATTGACACACATAATAGTTTTGAAGGACACAGTGATATTAAATCTTTGCATAGCTTAGATGATGATAAGAATGATGATATACAATCCCAGAGAAATGATGGTCCAGATGTTTACTCATCACCTGCTACTGGAAGCTTGAGTCAAACCGAAGCATCTTTCCCTATTAGTCAACCAGGAGTTTTGAAGCATAAGTTTGTTGATGAGGTGATGGTCAGTGATGAAGAGAGGAAACCTAGAGTTGTTCGAATTAAAAGCAACAAGCCAAATGTTCTGGATAGTGAAGAGGAAAGTGGAAAACAGAGTGTTAAAACTCAGAATGTGAAAGGGAAGAAGCTGGTTATAAATTTGGGAGCACGGAAAATTAATGTGGCCAGTTCCCCACGGTCTGATACGTCAAGCTGCCAAAAAGATCAAGATCTGGTGACTGTTAATGGAAATGAAGATATAAGCCAATCCAAGAAGGGGGAGAGATTTGCATTAGATAGACAGGACGGCACAGCTAGGCATATTGATGGTAAAGGAAATAGAGTTGACTCTGGACAATCAAAACTTTTTACCGTTTCGGGGAGAGAAGGAAATTTGATTAAGCTGGGAAAAGTTAAGCCAGATGTTTCTGAATTCAACCTAACTGCCGGTAGGGGCAATATGTCTGATGGGCGTTTAAAACATAGTAGTGATGGGATGATTGGTCAGGTTGGAATCAAAGCCATATCACGAGGTGAAAGAACGAATTTGGGGAAGCAATCAGAAGGTAGCTCTGATGCAAATGAGGAGGTAGATGACAATAATAATCGTACACCTTCTCATTCTTTGCCAAAAGATTCTAAACCTTTACTAAGATTTAAATTCAAGAAACCTAGCGTTGAAACTCAAAATTCCCCTCATCGGGAGGAGGAGAAGACGACAATCAAGGGCCAAAGGTCAAAAAGGAAGAGACCTTCACCTTTTAAAACACCATTTAATGAGTCTGAAGGTGTAAGTCAATCACATCAAGACAGTGCAATGGATGAGATCATGGATGCAAACTGGATTTTAATGAAATTGGGAAATGATGCAATTGGAAAGAGAGTTGAAGTTCATCAGACATCTGACAATTCTTGGCACAAGGGAGTGGTTACTGACGTAGTTGAAGGCACTTCGAAGTTGTATGTTGCGTTAGACGATGGGAAAATGAAGACCTTGGAACTCAGGAAACAGGGGGTCCGTTTTGTTCCTCAAAAGCAGAAGAGATCCAAGACATGA 2541 0.4384 MAFHVACPITCRRICFCALGFPRGVQASDDGSAANGFTQDVGELWDFLADTCRDDATVQVSVPKVLPPPPPPPDGLPLNADALDESASMKAKRIALQRKGAAAMIAAEEYARRFESGDVVNTPGNVTGEEQGQANRSYCRICKCGENEGSEKAQKMLSCKSCSKKYHRNCLRSWGRNRDLFHWSSWTCPLCRICEACRRTGDPSKFMFCKRCDGAYHCYCLQPPHKSVCNGPYLCTKHARCHSCGSNVPGNGLSVRWFMAYTNCDACGRLFTKGNYCPVCLKVYRDSESTPMVCCDTCQLWVHCQCDNISDEKYHQFQVDGNLQYKCPTCRGECYQVKNPEDAAQEIWRRRNVAEKDLIASLRAAAGLPTQDEIFSISPFSDDEDSGPLKLKSEYTRSFKFSLKNLSNDSPKKKSSSKKTAKRKDSESFMTNKIDTHNSFEGHSDIKSLHSLDDDKNDDIQSQRNDGPDVYSSPATGSLSQTEASFPISQPGVLKHKFVDEVMVSDEERKPRVVRIKSNKPNVLDSEEESGKQSVKTQNVKGKKLVINLGARKINVASSPRSDTSSCQKDQDLVTVNGNEDISQSKKGERFALDRQDGTARHIDGKGNRVDSGQSKLFTVSGREGNLIKLGKVKPDVSEFNLTAGRGNMSDGRLKHSSDGMIGQVGIKAISRGERTNLGKQSEGSSDANEEVDDNNNRTPSHSLPKDSKPLLRFKFKKPSVETQNSPHREEEKTTIKGQRSKRKRPSPFKTPFNESEGVSQSHQDSAMDEIMDANWILMKLGNDAIGKRVEVHQTSDNSWHKGVVTDVVEGTSKLYVALDDGKMKTLELRKQGVRFVPQKQKRSKT 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01817 846 MobiDBLite consensus disorder prediction 464 488 - -
Vian5g01817 846 ProSiteProfiles Zinc finger PHD-type profile. 274 333 IPR019787 -
Vian5g01817 846 MobiDBLite consensus disorder prediction 708 738 - -
Vian5g01817 846 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 193 243 IPR013083 -
Vian5g01817 846 ProSitePatterns RecR protein signature. 264 286 IPR015967 GO:0006281|GO:0006310|GO:0046872
Vian5g01817 846 CDD RING-H2 139 192 - -
Vian5g01817 846 FunFam PHD finger family protein 271 333 - -
Vian5g01817 846 MobiDBLite consensus disorder prediction 411 431 - -
Vian5g01817 846 SUPERFAMILY FYVE/PHD zinc finger 273 332 IPR011011 -
Vian5g01817 846 MobiDBLite consensus disorder prediction 753 767 - -
Vian5g01817 846 MobiDBLite consensus disorder prediction 643 767 - -
Vian5g01817 846 FunFam PHD finger family protein 133 248 - -
Vian5g01817 846 PANTHER HL01030P-RELATED 121 577 - -
Vian5g01817 846 SMART PHD_3 141 192 IPR001965 -
Vian5g01817 846 SMART PHD_3 193 239 IPR001965 -
Vian5g01817 846 SMART PHD_3 276 331 IPR001965 -
Vian5g01817 846 MobiDBLite consensus disorder prediction 438 463 - -
Vian5g01817 846 SMART ring_2 277 330 IPR001841 -
Vian5g01817 846 SMART ring_2 139 191 IPR001841 -
Vian5g01817 846 ProSiteProfiles Zinc finger PHD-type profile. 136 194 IPR019787 -
Vian5g01817 846 ProSiteProfiles Zinc finger RING-type profile. 139 192 IPR001841 -
Vian5g01817 846 ProSitePatterns Zinc finger PHD-type signature. 139 191 IPR019786 -
Vian5g01817 846 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 192 IPR013083 -
Vian5g01817 846 MobiDBLite consensus disorder prediction 518 534 - -
Vian5g01817 846 MobiDBLite consensus disorder prediction 518 539 - -
Vian5g01817 846 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 271 333 IPR013083 -
Vian5g01817 846 MobiDBLite consensus disorder prediction 406 491 - -
Vian5g01817 846 SUPERFAMILY FYVE/PHD zinc finger 130 192 IPR011011 -
Vian5g01817 846 SUPERFAMILY FYVE/PHD zinc finger 183 244 IPR011011 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01817 - - gmx:100815407 1532.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01817 5 40371185 40377905 Vian5g01817 5 40371185 40377905 ECH