Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01786 ATGGATGGTTACGAAGCTACAAGAATTGTGTTTGCTAGGATCCAAAACTTGGACCCTGAAAATGCATCCAAAATCATGGGTGTACTTCTTCTTCAGGACCATGGTGAGAAGGAAATGATTAGATTAGCATTTGGCCCAGAAGCACTGGTTCACTCTGTGATTCTCAAAGCACGCAAGGAGTTAGGTTTACCTTCGAACTCTCCGCCAACGCCCTCTACTCCTCCTTCTCCTTCGCCCTTCCTTTCGAGGCAAAGCTCCACTTCTTCCAGGCTTGGTGGTATCAACCTACCTCCTGCTCTCACCATTCCAAACCCTTCTTCCACTACTTCTTCGTGGCCTACTATGTCTGAGCTTCAAACCCCAGATGGTTTGATGAGCCCCAACCATTTAGTTGTTGGCTCTTCTACTTCTTCATCTTCCTTACCCTTTTATGTCAACGGAGGCTCAGATCCAATTGATGACTTTCAACTTCAGGATCAGCTTTCTTTCCTCAATGATGGTTCTCCCACTAGTGCTGCTCTTGCTCACAAGAGCAACCCAGATTTGTTTTACCCAACTCACTCGGACATGTCCTCAAGTCCTACTGGTGTTGCTGACCCTGCTCTCTTTCCTTCCTACGGTTGGGGAGGGTCTCTTCATCGAAGGAGTTGCTCGGTCAATGATGCTTGTTTGGGTTCTGAGGACCCGAACTCGGGGTTGGGGTGGAAGCCTTGTCTTTACTTTGCTAGAGGGTACTGTAAAAATGGGACAAGTTGCAGGTTCCTTCATGGTGGACTTGGAGATGCAGATGGTGCTGCTGCAATGGTAGGGTCTCCAAGCAAGATTGAGATGATGGAGCAGTGCCATGAGCTCTTCAGATCCAAATCTTCTCAGCAGCACAGATTGGCTGCTGCTTCTCAGCTCATGGGCTCTCCAACTTTTCCATACTCGCCTAAGTGCATGAATTTGCTGTTGCAGCAGCAACAGAACGATACTCAAAGAGCGGCAGCTGCAGCTCTGATGATGAGTGAGGATTTGCATAAATTTGGACGATCCAGGCTTGAAAGAAATGATTTTTCTCTGAACAGTCCTGGAATGGTAAACCCAGCTTCCAGGCAGATCTACTTGACATTTCCAGCAGACAGCACTTTCAGAGAGGAAGATGTTTCAAACTACTTCAGCATTTATGGCCCAGTCCAAGACGTGAGGATCCCATACCAGCAGAAGCGAATGTTTGGTTTTGTGACCTTTGTTTATCCTGAGACTGTGAAGCTCATTCTATCTAAAGGAAATCCTCATTTTGTGTGTGATGCTCGAGTGCTTGTTAAGCCTTACAAGGAGAAAGGCAAAGTGCCGGACAAGAAGCAGCAGCAGGTTGACAGAGGAGATTTTTCACCATGTGGTACTCCTACTGGACTAGAGGCCAGAGACCAATTTGATCTTCAACTTGGAGGCAGAATGTTCTACAATACTCAAGACATGCTGTGGAGGAGGAAGCTGGAGGAGCAAGCTGATTTGCAGCAGGCTCTTGAGTTACAAAGTAGGAGGCTAATGGGTCTGCAACTTCTTGACATCAAGAAGCATCACCAGCGTGCACTCTCCACTGGAAGTCCAATTCCTTCCCCAACCCACTCTCCTAACATGTTCAACCAAAATCTTGTTCTTCCTTCCTTTCACACTAGTTCAGAGGCCCAAAATGAGAGTGGTTCATCTTCTGCTCCAGCTAGTAGTACTACATCAGTTTCAGCTGGTCAGCAGCCGGTCAACATATCTGTTGGTAAGGAAATGGTGGTCAACGGGGAGAATGGATATGATGAAGGCAATGGGAAGCAGAGCCCTAGTCGTGAAGATCGTGAATTGCAAGAATGTTTGGAGCACAATCTCCCTGATAGCCCTTTTGCTTCCCCAACAAAAGCTGCTGGTGACTTCATGGTTTCCTTCTCCAATGGACCTAATGAGGCCATTGATGCAGATGCCTCAAGTGCATCTGCCAACTCTAAATTTGGTACTAGCGCATTACTTCCACCAGCTTCTGCTCTTGACATGGGAACTTTCAAATCCTATAACTGCCAAATACCAAGGTTCTCTTCTAGTCATGGAACTATTGGGATGTTAGCAGGCACCGGTGGACCAATTGGCATTTAG 2124 0.4699 MDGYEATRIVFARIQNLDPENASKIMGVLLLQDHGEKEMIRLAFGPEALVHSVILKARKELGLPSNSPPTPSTPPSPSPFLSRQSSTSSRLGGINLPPALTIPNPSSTTSSWPTMSELQTPDGLMSPNHLVVGSSTSSSSLPFYVNGGSDPIDDFQLQDQLSFLNDGSPTSAALAHKSNPDLFYPTHSDMSSSPTGVADPALFPSYGWGGSLHRRSCSVNDACLGSEDPNSGLGWKPCLYFARGYCKNGTSCRFLHGGLGDADGAAAMVGSPSKIEMMEQCHELFRSKSSQQHRLAAASQLMGSPTFPYSPKCMNLLLQQQQNDTQRAAAAALMMSEDLHKFGRSRLERNDFSLNSPGMVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKLILSKGNPHFVCDARVLVKPYKEKGKVPDKKQQQVDRGDFSPCGTPTGLEARDQFDLQLGGRMFYNTQDMLWRRKLEEQADLQQALELQSRRLMGLQLLDIKKHHQRALSTGSPIPSPTHSPNMFNQNLVLPSFHTSSEAQNESGSSSAPASSTTSVSAGQQPVNISVGKEMVVNGENGYDEGNGKQSPSREDRELQECLEHNLPDSPFASPTKAAGDFMVSFSNGPNEAIDADASSASANSKFGTSALLPPASALDMGTFKSYNCQIPRFSSSHGTIGMLAGTGGPIGI 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01786 707 SUPERFAMILY CCCH zinc finger 235 257 IPR036855 GO:0046872
Vian5g01786 707 SMART rrm1_1 366 436 IPR000504 GO:0003723
Vian5g01786 707 CDD RRM_AtC3H46_like 367 436 IPR034365 -
Vian5g01786 707 MobiDBLite consensus disorder prediction 527 582 - -
Vian5g01786 707 Gene3D - 314 456 IPR012677 -
Vian5g01786 707 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 377 422 IPR000504 GO:0003723
Vian5g01786 707 MobiDBLite consensus disorder prediction 524 612 - -
Vian5g01786 707 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 632 - -
Vian5g01786 707 SUPERFAMILY RNA-binding domain, RBD 377 451 IPR035979 GO:0003676
Vian5g01786 707 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 365 441 IPR000504 GO:0003723
Vian5g01786 707 SMART c3hfinal6 234 258 IPR000571 GO:0046872
Vian5g01786 707 Gene3D - 226 296 - -
Vian5g01786 707 MobiDBLite consensus disorder prediction 79 115 - -
Vian5g01786 707 FunFam zinc finger CCCH domain-containing protein 53-like isoform X2 372 443 - -
Vian5g01786 707 MobiDBLite consensus disorder prediction 442 464 - -
Vian5g01786 707 MobiDBLite consensus disorder prediction 61 115 - -
Vian5g01786 707 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 237 257 IPR000571 GO:0046872
Vian5g01786 707 ProSiteProfiles Zinc finger C3H1-type profile. 232 259 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01786 Vian-Chr5 40097935 40100824 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01786 - - gmx:100801341 1198.34