Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01779 ATGCTACTATTTGGGTCATTTACTGAAGATGAAACCCGATCACTGCTGTCAAAGCAGTCTTCTGGGAAAAATGAAAAGTCTGTGGAGAAGAATCAGCTGCAGTTTGGATCTCTGAATTCTGTTACTGTTGAGTCAAACAACCTGCAAAACTCATCAAAGGCATCAGTTAGTGCTCCGCCCTCTGATTCTCAGAAATGTAATGGAGTGAAAAATGATAATGATAGTTCATCTGAAGTTCCAGGAGCAACTAAAGAGAATGGAAGCATTACCAATTTCTCCCCTAGCCCCCCGAGTACGAGCAGTGTGAATGAAGTTGAAGAGAAAAATGCAAATTCTTTTACATTACTTGATGAAGATGGTCCCTCAAACAAGTTTTCAAATTTGAGCCTAGATGCTTCCGAGAGTGAAAACTTGAGGAATGTACATAAAACTGGCAATGGTGATCATTCTTCATTAAAGTTCTCCTATCGAGAACCCGCAAAGGCACCTAACGGGCATGCTGTTCTGCCTGTTAAAGACATACTGCCTCGAGGCCTTATCAACTCTGGGAATCTTTGCTTTCTTAATGCAACCGTGCAGGCCCTGTTGTCATGCTCACCTTTTGTTCATCTTTTACAGCAATTAAGAACTCGCAACCTTCCTAAGATTGGATATCCTACATTGACAGCATTTGCTGAGTTCATAACCCAATTTGATGTGCCAAGCAACACTAACATAAACAAGCAAGATACGGATATGTTTGAGTCTGGAAGGCCATTTTGCCCTGTTATGTTTGAAAGTGTTCTAAAAAATTTTACTCCAGATGTGCCAAATAGCATTTCAGGAAGACCAAGGCAGGAAGATGCTCAGGAATTTCTGAGCTTTGTAATGGATCAAATGCATGATGAATTACTGAAGCTTGAAGGACAATCTTCAAGTCTTAATGGCACTCAATTTTCTCTTGTTTCTTCTGTGGAAGATGATGAATGGGAAACAGTGGGGCCGAAGAATAAATCTGCTGTTACAAGGACTCAAAGCCTTCGCCCATCAGAATTAAGTAGTATTTTTGGAGGAGAGCTTAAAAGTTTGGTGAGAGCTAAAGGAAATAAGTCGGCCTTTGTTCAACCATATCTCTTACTCCATCTTGACATCTATCCTGACACTGTACACACTATCGAGGATGCACTACGCTTGTTTTCTGCATCAGAAACTCTTGAAGGGTACCGGGTATCACCCACTGCAAAGGCTGGTGTGGTGACTGCAAGAAAATCTGTACAAATAGTGACGCTTCCTAAAATAATGATATTTCACCTGATGCGTTTTGGTTACGGAAGCCAGGGAAGCATCAAGTTGCATAAGGCCGTGCAGTTTCCTCTTGAGTTGGTATTGAGTCGTGATTTGCTTGTTTCACCATCTACTAAGGGTCGGAAGTATGAACTTGTTGCTACAATTACTCACCATGGAAGGGAGCCTTCGAAGGGGCACTACACAGCTGATGCCCAATACCCCAATGGTCGGTGGCTACGATTTGATGATGCATCTGTCTATGCTATTGGAACAAATAAGGTGCTGCATGATCAAGCCTATGTCCTTTTCTACAGACAGCTGTGA 1590 0.4201 MLLFGSFTEDETRSLLSKQSSGKNEKSVEKNQLQFGSLNSVTVESNNLQNSSKASVSAPPSDSQKCNGVKNDNDSSSEVPGATKENGSITNFSPSPPSTSSVNEVEEKNANSFTLLDEDGPSNKFSNLSLDASESENLRNVHKTGNGDHSSLKFSYREPAKAPNGHAVLPVKDILPRGLINSGNLCFLNATVQALLSCSPFVHLLQQLRTRNLPKIGYPTLTAFAEFITQFDVPSNTNINKQDTDMFESGRPFCPVMFESVLKNFTPDVPNSISGRPRQEDAQEFLSFVMDQMHDELLKLEGQSSSLNGTQFSLVSSVEDDEWETVGPKNKSAVTRTQSLRPSELSSIFGGELKSLVRAKGNKSAFVQPYLLLHLDIYPDTVHTIEDALRLFSASETLEGYRVSPTAKAGVVTARKSVQIVTLPKIMIFHLMRFGYGSQGSIKLHKAVQFPLELVLSRDLLVSPSTKGRKYELVATITHHGREPSKGHYTADAQYPNGRWLRFDDASVYAIGTNKVLHDQAYVLFYRQL 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01779 529 MobiDBLite consensus disorder prediction 1 106 - -
Vian5g01779 529 Gene3D Cysteine proteinases 168 528 - -
Vian5g01779 529 Pfam Ubiquitin carboxyl-terminal hydrolase 178 526 IPR001394 GO:0004843|GO:0016579
Vian5g01779 529 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 177 529 IPR028889 -
Vian5g01779 529 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 471 489 IPR018200 GO:0004843|GO:0006511
Vian5g01779 529 MobiDBLite consensus disorder prediction 10 106 - -
Vian5g01779 529 FunFam Ubiquitin carboxyl-terminal hydrolase 168 528 - -
Vian5g01779 529 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 178 193 IPR018200 GO:0004843|GO:0006511
Vian5g01779 529 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 21 528 - -
Vian5g01779 529 SUPERFAMILY Cysteine proteinases 171 527 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01779 Vian-Chr5 40048495 40052397 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01779 174 529 Miscellaneous Gene Families AT2G24640 28.767 8.21e-23 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01779 K11841 - gmx:100799656 876.7