Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01778 ATGAATTCAAAATCCAAACTTTGGACAAACCCAACTTCAACATCAACCAGCTGTAGCAGTAGCAGCAGCAGCAGCATCAGCAGCGAGAACGATGACAGCCCCTTTTGTTCCCAACGCATACCCATCGTTGTTTCTGCCTTCTTCAATTCTCACCGATCACTCGCTGTTCTCTCCGGACACGTGGGTTCCGTTTCATGCTTGGCCCTGTGCGGTGAGTTCATCCTGAGTGCCTCTCAGGGTAAGGATATCATAGTCTGGCAGCAACCGGACTTGAGGGTCTTTGCAAAGTTCGGACAAGGAGAGGGCTCGGTGAAAGCACTTGCAACGGTTGGCAACAAGGTTTTCACCGCACATCAAGATAGCAGGATCAGAGTTTGGAAGGTGTCAAGAAGCTCGGAGAACGTGTTCAAGTTTGTCGATTCTCTTCCCACGACCAAGGACTATCTGGGGAAGTTCATGAAGCAGAGCAACTATGTCCAGACCCGGAGGCACCACAAGCGTTTGTGGATTGAGCATGCGGATAGCATTTCTTGCTTGACGGTTTATAACGGGTTGATTTATTCTGGTTCGTGGGATAAGACTCTGAAGGTGTGGAAGCTCTCGGATTTGAAGTGTTTGGAGTCGATCAAGGCTCATGATGATGCAATCAATGGGCTGGTGGCGTGTAAAGGGGTGGTGTATTCTGCTTCTGCTGATGGAAAGATTAAAGCTTGGGGGAGAAAAGAGGGAAAGGGGGAGCATTGCTTGAAGGGGGTTTTGGAGGGTCATAAGGATGTTTCGTTCAATTCTATTGTTGTTTCTGAGGATGGGAAATGGGTTTATGGAGGAGGATCCGATGGGTTTGTGATGGGGTGGGAGGGGAGTGGAAGTTCTGAGAGTTGGAAGCTGGTTTCTGAGACCAAGGCACATGAGATGGCTGTGTTGTGCATGTGTCTGATGGGGGAGTTTTTGTGCAGTGGATCAGCAGATAAAAGCATAGGGATTTGGAGAAGAGAGGCTTTTGGTAAGCTTTGTAAAGTTGGTGTCATAAATGGCCATGAAGGGCCTGTGAAGTGTTTGCAAGCTTCATCATCTAGTAGGATTGGAGGTGGTTTTTTATTGTACAGTGGAAGCCTTGACAGAAGTGTGAGAGTTTGGTGGGTTCCAAGGTATAATGATGCAGAAGTAGAGGATAATAGCTCTACACAGTTTGGCACAGAGAATAAGTCCATGCTAGCATAA 1221 0.4767 MNSKSKLWTNPTSTSTSCSSSSSSSISSENDDSPFCSQRIPIVVSAFFNSHRSLAVLSGHVGSVSCLALCGEFILSASQGKDIIVWQQPDLRVFAKFGQGEGSVKALATVGNKVFTAHQDSRIRVWKVSRSSENVFKFVDSLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWKLSDLKCLESIKAHDDAINGLVACKGVVYSASADGKIKAWGRKEGKGEHCLKGVLEGHKDVSFNSIVVSEDGKWVYGGGSDGFVMGWEGSGSSESWKLVSETKAHEMAVLCMCLMGEFLCSGSADKSIGIWRREAFGKLCKVGVINGHEGPVKCLQASSSSRIGGGFLLYSGSLDRSVRVWWVPRYNDAEVEDNSSTQFGTENKSMLA 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01778 406 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 13 383 IPR045182 -
Vian5g01778 406 ProSiteProfiles Trp-Asp (WD) repeats profile. 169 208 IPR001680 GO:0005515
Vian5g01778 406 ProSiteProfiles Trp-Asp (WD) repeats profile. 343 379 IPR001680 GO:0005515
Vian5g01778 406 FunFam BnaA09g28200D protein 159 243 - -
Vian5g01778 406 Gene3D - 150 243 IPR015943 GO:0005515
Vian5g01778 406 MobiDBLite consensus disorder prediction 1 32 - -
Vian5g01778 406 Gene3D - 244 401 IPR015943 GO:0005515
Vian5g01778 406 Gene3D - 6 148 IPR015943 GO:0005515
Vian5g01778 406 PRINTS G protein beta WD-40 repeat signature 114 128 IPR020472 -
Vian5g01778 406 PRINTS G protein beta WD-40 repeat signature 186 200 IPR020472 -
Vian5g01778 406 PRINTS G protein beta WD-40 repeat signature 367 381 IPR020472 -
Vian5g01778 406 CDD WD40 53 379 - -
Vian5g01778 406 Pfam WD domain, G-beta repeat 340 379 IPR001680 GO:0005515
Vian5g01778 406 Pfam WD domain, G-beta repeat 251 285 IPR001680 GO:0005515
Vian5g01778 406 Pfam WD domain, G-beta repeat 171 199 IPR001680 GO:0005515
Vian5g01778 406 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Vian5g01778 406 SUPERFAMILY WD40 repeat-like 51 383 IPR036322 GO:0005515
Vian5g01778 406 SMART WD40_4 50 87 IPR001680 GO:0005515
Vian5g01778 406 SMART WD40_4 246 286 IPR001680 GO:0005515
Vian5g01778 406 SMART WD40_4 90 127 IPR001680 GO:0005515
Vian5g01778 406 SMART WD40_4 202 239 IPR001680 GO:0005515
Vian5g01778 406 SMART WD40_4 336 380 IPR001680 GO:0005515
Vian5g01778 406 SMART WD40_4 293 330 IPR001680 GO:0005515
Vian5g01778 406 SMART WD40_4 162 199 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01778 Vian-Chr5 40044510 40045730 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01778 159 379 Miscellaneous Gene Families AT5G08390 24.454 5.30e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01778 - - gmx:100775295 696.041