Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01774 ATGTTTCCACAAACACCAACTATTTCACTTTTCATTGTCCTCTCTTCATTAATCTTATGTAATGGCTATTACATAGAGGAGCTACTTTACAAAACAAACTACAAACACTACCCTATGCATCATGGCAGATTCATCAAGAGAAAACATGAACATTTTGGTCTTATAACAAGGGCTAATAGAGTTGCCCCTCGTGGAACAGTTAATGTTGATGATTTCGGAGCCAAGGCAGATGGAAGAGATAATTCCGAGGCATTTGGAAAGGCATGGAGTGAAGCATGTTCAAGAGGGTCTATCCTTGTGGTACCTGGAAATAGGATCTATCGTCTTAAGCCAATCACATTTTCTGGTCCATGTCGACCCAACACTGCCTTTATGCTCTATGGCACAATCGAGGCATGGACTCAGATGTCGGCATACAAAGATAGACAACATTGGATTATGTTTGACAGTGTTTCAAATTTCAGAGTTGGTGGTGGTGGCACATTCGATGGCAAAGGAAAAAAATGGTGGCAAAACTCCTGCAAAGCAACCACTAACCTTCCATGCAACGACCAACCAAGACCAAAGGCTGTGACTTTCTTTCAATGCAAAAATTTGGAAGTGAGAAACCTGATGTTCAAAGATGCACAGCAAATGCACTTAGTCTTTGATGGATGCTTCAATGTTATTGCTTCGAATCTGGTGATCAGAGCACCAGGGGACAGCCCCAACACTGATGGAATTCATGTAGCAGAGACACAAAATATAGTGATAAGCAATAGTCATATTGGGACAGGTGATGATTGTATTTCGATAATAAGTGGGTCAGAAAACGTTCGAGCAACAGATATCACCTGCGGCCCTGGACATGGAATAAGCATTGGTAGCTTGGGAGCTGATAAATCAGAAGCTGAAGTGTCCAATGTGGTTGTGAACAGAGCAACTTTAACCGGAACCACTAATGGAGTGAGAATAAAGACTTGGCAGGGAGGCTCTGGTTATGCAAGAAACATCAAATTTTTGAACATAATGATGCAAAATGTGACAAATCCCATCATCATAGATCAATACTACTGTGACCAAACCAAGCCATGTCAAGAGCAGAACTCAGCTGTGCAATTAAGCAATGTTTTATACCAAAACATAAGAGGAACAAGTGCCTCAGAAGTGGCTATCAAATTTGACTGCAGCAGAGCAGTCCCATGCAGGCAAATCTACCTGCAGGATGTGATTTTAGAGCCACAAGGCAGAGGTGGCACCATTGCAACATGTGAAAATGTTAGATATGTGAACAGAGGAAAGTTTTTTCCTCAATGCACTCCATGA 1305 0.4169 MFPQTPTISLFIVLSSLILCNGYYIEELLYKTNYKHYPMHHGRFIKRKHEHFGLITRANRVAPRGTVNVDDFGAKADGRDNSEAFGKAWSEACSRGSILVVPGNRIYRLKPITFSGPCRPNTAFMLYGTIEAWTQMSAYKDRQHWIMFDSVSNFRVGGGGTFDGKGKKWWQNSCKATTNLPCNDQPRPKAVTFFQCKNLEVRNLMFKDAQQMHLVFDGCFNVIASNLVIRAPGDSPNTDGIHVAETQNIVISNSHIGTGDDCISIISGSENVRATDITCGPGHGISIGSLGADKSEAEVSNVVVNRATLTGTTNGVRIKTWQGGSGYARNIKFLNIMMQNVTNPIIIDQYYCDQTKPCQEQNSAVQLSNVLYQNIRGTSASEVAIKFDCSRAVPCRQIYLQDVILEPQGRGGTIATCENVRYVNRGKFFPQCTP 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01774 434 SMART pbh1 299 320 IPR006626 -
Vian5g01774 434 SMART pbh1 219 245 IPR006626 -
Vian5g01774 434 SMART pbh1 328 349 IPR006626 -
Vian5g01774 434 SMART pbh1 246 267 IPR006626 -
Vian5g01774 434 SUPERFAMILY Pectin lyase-like 53 433 IPR011050 -
Vian5g01774 434 Gene3D - 50 429 IPR012334 -
Vian5g01774 434 FunFam Polygalacturonase QRT2 54 433 - -
Vian5g01774 434 Pfam Glycosyl hydrolases family 28 99 421 IPR000743 GO:0004650|GO:0005975
Vian5g01774 434 ProSitePatterns Polygalacturonase active site. 276 289 IPR000743 GO:0004650|GO:0005975
Vian5g01774 434 PANTHER - 66 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01774 Vian-Chr5 40004033 40007002 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01774 28 433 Glycoside Hydrolase AT3G07970 57.317 4.51e-159 454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01774 K01184 - gmx:732596 786.949
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01774 5 40004033 40007002 Vian5g01774 5 40004033 40007002 ECH