Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01765 ATGGCTAGTGCTGCAGTTATTGGACTCAGTGGAGGAAAGAGGCTTTTGGGTTCATTATACCATTACTCTGATATTATAGAAAAGCTTTCTTATGGAAGTGATTTTGGATCCACACAGTATCAGATTGTTTCAACAAAATCTGTGATAGTTGCCAAGAAGTCATCCAACTACACTCCAACTTTTCCAGCATCGAACCGGCAGAATCAGTCCATCAAGGCTCTTAAGGAGCATGTTGATGATGCTGCTACCGTTGCGGAGCCATGGTTTCAGAGTTCCAGTTCTAATGACTTAGAAGTGGAAAGCTCTGAAATGGGTTATTCTGTGGAGGCTCTTCTTTTGCTGCAGAAGTCAATGCTGGAAAAGCAATGGAGCCTTTCCTTTGAAAGGGAAGTGCTGACAGAACGTTCTAGTAAAGCGAAAATCCGTAGGAAAGTGGCAGCGGTGACATGTTCTGGAGTGTCTGCAAGGCAAAGAAGAATGAATGCCAAGCGGAAGACTGTGGTTAAAGCCTGTGGTGCTGTGCCGCTGAAGTCCAAAATCAGTCCAGAGCGGCTTCAAAACCGTGTGAAGGGTTATGTGAAAGGAGTAGTGAGTGAGGAATTGCTCTCTCATGCAGAAGTGGTTAGCCTATCAGAGAAAATAAAAGTTGGGCTTTACTTAGATGAGCAGAAATCCAGATTGAAGGAGAGACTGGGATGTGAACCCTCTGACGATGAAATGGCTACTTCATTGAAGATGTCTCGTACTGAACTACGAGAAAAAATGCTAGAGTGCTCTCTGGCAAGAGAAAAGTTGGCTATGAGCAATGTTCGCTTAGTTATGTCTATTGCTCAAAAATATGAAAACGCTGGTACAGAAATGGGTGACCTTGTTCAGGGTGGCTTGATTGGACTACTTCGTGGTATTGAAAAGTTTGATTCTTCAAAAGGGTTTAAGATTTCAACCTACGTTTACTGGTGGATACGTCAGGGTGTTTCAAGAGCCTTGATTGAGAATTCAAGAACATTAAGATTGCCTGCTCATTTGCATGAGAGATTATCTTTAATCCGCAATGCAAAGTTTAGACTAGAAGAGAGAGGCATCACTCCAACTATTGATAGGATTGCAAAACACCTTAACATGTCTCAAAAGAAAGTCAGAAATGCCACTGAGGCAATCAACAAAACTATCTCGCTTGATAGAGAAGCATTCCCCTCTTTGAATGGTCTACGAGGAGACACTCATCATAGTTACATTGCAGATAATCGCGTTGAGAACATCCCGTGGAAGGGAGTAGATGAGTGGGCACTAAAGGATGAAGTGAATAAACTCATGAATGTGACCCTTAAGGAACGAGAGAGAGAAATTATTCGACTTTATTATGGACTGGGTAAAGAATGTCTTACATGGGAAGACATTAGTAAACGGATGGGTTTATCGAGAGAAAGAGTAAGGCAAGTTGGACTTGTTGCATTGGAGAAACTAAAACATGCTGCAAGGAAGGGAGAATTGGAGGCAATGCTGTTGAAACATTGA 1515 0.4224 MASAAVIGLSGGKRLLGSLYHYSDIIEKLSYGSDFGSTQYQIVSTKSVIVAKKSSNYTPTFPASNRQNQSIKALKEHVDDAATVAEPWFQSSSSNDLEVESSEMGYSVEALLLLQKSMLEKQWSLSFEREVLTERSSKAKIRRKVAAVTCSGVSARQRRMNAKRKTVVKACGAVPLKSKISPERLQNRVKGYVKGVVSEELLSHAEVVSLSEKIKVGLYLDEQKSRLKERLGCEPSDDEMATSLKMSRTELREKMLECSLAREKLAMSNVRLVMSIAQKYENAGTEMGDLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALIENSRTLRLPAHLHERLSLIRNAKFRLEERGITPTIDRIAKHLNMSQKKVRNATEAINKTISLDREAFPSLNGLRGDTHHSYIADNRVENIPWKGVDEWALKDEVNKLMNVTLKEREREIIRLYYGLGKECLTWEDISKRMGLSRERVRQVGLVALEKLKHAARKGELEAMLLKH 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01765 504 Pfam Sigma-70 region 2 267 334 IPR007627 GO:0003700|GO:0006352|GO:0006355
Vian5g01765 504 Gene3D - 420 498 IPR036388 -
Vian5g01765 504 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 337 393 IPR013324 -
Vian5g01765 504 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 109 501 - -
Vian5g01765 504 ProSitePatterns Sigma-70 factors family signature 1. 289 302 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vian5g01765 504 Pfam Sigma-70, region 4 441 490 IPR007630 GO:0003700|GO:0006352|GO:0006355
Vian5g01765 504 Pfam Sigma-70 region 3 344 415 IPR007624 GO:0003700|GO:0006352|GO:0006355
Vian5g01765 504 NCBIfam sigma-70 family RNA polymerase sigma factor 261 491 IPR014284 GO:0003700|GO:0006352|GO:0006355
Vian5g01765 504 Gene3D RNA Polymerase Primary Sigma Factor 45 335 - -
Vian5g01765 504 PRINTS Major sigma-70 factor signature 289 302 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vian5g01765 504 PRINTS Major sigma-70 factor signature 477 488 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vian5g01765 504 PRINTS Major sigma-70 factor signature 313 321 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vian5g01765 504 PRINTS Major sigma-70 factor signature 462 477 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vian5g01765 504 PRINTS Major sigma-70 factor signature 442 454 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vian5g01765 504 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 187 335 IPR013325 GO:0003700|GO:0006352|GO:0006355
Vian5g01765 504 CDD Sigma70_r4 431 489 - -
Vian5g01765 504 Gene3D - 336 387 IPR036388 -
Vian5g01765 504 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 421 494 IPR013324 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01765 Vian-Chr5 39928810 39932779 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01765 K03086 - gmx:100801884 870.152
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01765 5 39928810 39932779 Vian5g01765 5 39928810 39932779 ECH