Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01751 ATGGGAGTTGCTGGATTTGAAATTGGTGGGAATTCTGCTTCTGCTTCTGTTTTGCATTTTGGTGCCAATTCGTTATCTTCCTATAAGGTTCCAATTTCCTTGAGACCCTTTTTTGGGAATGCTTTGAACGCGAGGTTTACGGGGAAAATTCGGGTTTCTCAGACTCAGAAGCCGAATTTTGGTGCAGTTTCTGCTTCACTGAATGGTGGCTCTAATGTTGGGTTGATCAGTGATGCGATTCTTCCGAAGGACTCAGAATTTAAGCCTTCCTTTGACGAATATTTGAAGGCTATGGAATCTGCCAGAACTGAGAGGGACAAGAAGCGTGCTGCCACTGCTAGGAAACAGAAGACGACGGAAAAGGGGGATAATAGCACCGTAAAAGTTAGCAGTGCAAGAGTGAAAATTGAGAGAAAAGATGGGCATGAAGGCGCTGAAGAAGGTTCCTCCAGAAGTAGTGGCAAGGTCAGAAGATCAGCTACTAAAGGATTTAGAAGTGAAAACGATGGGAAAGAAAACGACCTTGATGTAAAGGCAAAGCAGAAAAATGGGTCGTTGAAACGCCAGAGTCATAGTTTAGAACCAAAGTCTAAGAGTATAGTTAGGTCTAGTTTGAATGGTAGCCGTGGGAGTGTCGTAAAGAGGGAAGTTATTCATGATTTATATTCTTCAAAGATTGTGGGAGAGAAGGTTGTTGGTAGCAGACAAAGGGATTATAACACACAGGGTAAAATCCCTGATAGAGGTCTAACACAAGATGTTCAAGACAAAGGGATTGTAAGAAGACACACCGAGAATGGAAGTTTTATAAATAGAAATGGTCTGTCTAATGTGAAAATGAATGGAGGCCGCAAGCGTTTCATTGACAGGGGTTATGATTCTGACATTTCGGAGGTGGAACGAGCAGCATTTGAGAATCTGGAAGACCCGAACCAGGTTATCAGAAAGTCACAATTTTCACACAAGGAAATGGAGGAGAAAATCCAAAAGCTAGCCAATTCGTTAAATGGTGCAGACATCAATTTACCTGAATGGATATTTTCTAAGATGATCAGAAGTGCAAGGCTTAAATTTTCTGACTATTCCATAACAAGGATTATCACAATCTTGGGACAACTAGGAAACTGGCAGCGAGTGATACAGGTGATTGAATGGCTTCAAAAGGGTGAACGTTTCAAGTCCACTAAGCTAAGGAATATATATACTGCTGCTCTTTTTGCACTTGGAAAGTCCAAGAGACCCGTCGAGGCACTAAATATATTTCATGCAATGCAGCAACAAATGTCCTCGTATCCTGATTTAGTAGCTTATCGGAGCATTGCTGTGACTCTTGGACAAGCAGGGCATATGAAGGAGCTCTTTGATGTGATTGATATTATGCGATCACCACCAAAGAGAAAGTTTAAAACAGGGGTATTTAAGAGCTGGGACCCAAGGCTGGAACCAGATTTTGTAGTCTATCATGCAGTGCTTAACGCTTGTGTTAAGCAGAAACAATGGGAAGGAGCCTTTTGGGTTTTGCAGCAGTTAAAGAAGCAAGGACAACAACCTTCTGCCACAACTTATGGCCTAGTCATGGAGGTGATGCTTTCATGTGGCAAGTACAACTTGGTTCATGAATTTTTCAGAAAACTTCAGAAGTCTTTCGTTCCTAATTCATTGACGTATAGAGTTCTTGTAAATACACTGTGGAAAGAGGGAAAAAGCGATGAGGCTATATTGGCCGTCCAAGAAATGGAAAATCGTGGAATTGTAGGTTCGGCTTCCCTTTATTATGATCTGGCTCGATGCCTCTGTGCAGCTGGAAGAAGTCACGAGGCACTAAAGCAGATAGACAAGATATGCAAGGTTGCAAATAAACCACTGGTAGTGACCTACACTGGTTTGATGCAAGCAAGTCTAGACTCTGGAAATATTCAAGATGGGGCTTATATTTTTGAGAAAATGAAGGAAGTTTGTGCTCCAAACCTGGTTACATATAACATATTGCTGAAAGCTTACTTGGAACATGACATGTTCCAAGAAGCTAAAGCGTTGTTTGAGCAGATGTCAGAAAATGCAAATTGTCTGAGGGGAAATACTGATTACAAGATGCTGGTGGTACCAGATATATACACATTCAACACCATGTTAGATGCATGTGTTTCAGAGCAGAGATGGGATTATTTTGATCATGTCTATCAAAGGATGTTGTACCATGGTTATCACTTCAATCCAAAACGTCATCTTCAAATGATATTGGATGCTTCAAGAGCGGGAAAGGAACGGCCTTTGGAGATAACATGGAAACAATTAACCGACATGGATCGAAATATTCCAACTTCTCTGATCAAGGAGATGTTTTGTTCTAAGCTTGAGAAAGAAGACTATGTTGCTGCTCTCACATGTATGACCAGCAATCTTCCAAAAGAGTCGCAGCCATTTTCCAAAGCGTCTTGGTTGAAACTATTAAAGAATAATTCTCAGCGGTTTCAGAAGGATACGATTGTTAGACTAATGAACGAGGCCAACAAAATGCTTTCCAATGGAAGTTTACCAAATCCAACACTTGAGTATTTGATACAATCATGTAAAAAATTTCTTTTTGCCACTGAAATCAGTGAAGTTGACATGGATTCAATGAAAAATGTAGTTGAAGTTGAAGTAGAGAATAAGCTGGTCGTAGCCAACTTTAGATGA 2679 0.4072 MGVAGFEIGGNSASASVLHFGANSLSSYKVPISLRPFFGNALNARFTGKIRVSQTQKPNFGAVSASLNGGSNVGLISDAILPKDSEFKPSFDEYLKAMESARTERDKKRAATARKQKTTEKGDNSTVKVSSARVKIERKDGHEGAEEGSSRSSGKVRRSATKGFRSENDGKENDLDVKAKQKNGSLKRQSHSLEPKSKSIVRSSLNGSRGSVVKREVIHDLYSSKIVGEKVVGSRQRDYNTQGKIPDRGLTQDVQDKGIVRRHTENGSFINRNGLSNVKMNGGRKRFIDRGYDSDISEVERAAFENLEDPNQVIRKSQFSHKEMEEKIQKLANSLNGADINLPEWIFSKMIRSARLKFSDYSITRIITILGQLGNWQRVIQVIEWLQKGERFKSTKLRNIYTAALFALGKSKRPVEALNIFHAMQQQMSSYPDLVAYRSIAVTLGQAGHMKELFDVIDIMRSPPKRKFKTGVFKSWDPRLEPDFVVYHAVLNACVKQKQWEGAFWVLQQLKKQGQQPSATTYGLVMEVMLSCGKYNLVHEFFRKLQKSFVPNSLTYRVLVNTLWKEGKSDEAILAVQEMENRGIVGSASLYYDLARCLCAAGRSHEALKQIDKICKVANKPLVVTYTGLMQASLDSGNIQDGAYIFEKMKEVCAPNLVTYNILLKAYLEHDMFQEAKALFEQMSENANCLRGNTDYKMLVVPDIYTFNTMLDACVSEQRWDYFDHVYQRMLYHGYHFNPKRHLQMILDASRAGKERPLEITWKQLTDMDRNIPTSLIKEMFCSKLEKEDYVAALTCMTSNLPKESQPFSKASWLKLLKNNSQRFQKDTIVRLMNEANKMLSNGSLPNPTLEYLIQSCKKFLFATEISEVDMDSMKNVVEVEVENKLVVANFR 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01751 892 MobiDBLite consensus disorder prediction 160 195 - -
Vian5g01751 892 Gene3D Tetratricopeptide repeat domain 614 823 IPR011990 GO:0005515
Vian5g01751 892 FunFam Pentatricopeptide repeat-containing protein 326 472 - -
Vian5g01751 892 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 656 686 IPR002885 -
Vian5g01751 892 MobiDBLite consensus disorder prediction 100 207 - -
Vian5g01751 892 Pfam PPR repeat 705 734 IPR002885 -
Vian5g01751 892 Pfam PPR repeat 555 584 IPR002885 -
Vian5g01751 892 Pfam PPR repeat 401 426 IPR002885 -
Vian5g01751 892 Pfam Pentatricopeptide repeat domain 622 667 IPR002885 -
Vian5g01751 892 Pfam Pentatricopeptide repeat domain 480 529 IPR002885 -
Vian5g01751 892 Gene3D Tetratricopeptide repeat domain 363 547 IPR011990 GO:0005515
Vian5g01751 892 SUPERFAMILY TPR-like 471 686 IPR011990 GO:0005515
Vian5g01751 892 MobiDBLite consensus disorder prediction 100 122 - -
Vian5g01751 892 MobiDBLite consensus disorder prediction 132 153 - -
Vian5g01751 892 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 552 586 IPR002885 -
Vian5g01751 892 PANTHER OS01G0674700 PROTEIN 66 876 IPR044645 GO:0009658
Vian5g01751 892 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 483 517 IPR002885 -
Vian5g01751 892 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 703 737 IPR002885 -
Vian5g01751 892 NCBIfam pentatricopeptide repeat 485 518 IPR002885 -
Vian5g01751 892 NCBIfam pentatricopeptide repeat 705 731 IPR002885 -
Vian5g01751 892 NCBIfam pentatricopeptide repeat 658 686 IPR002885 -
Vian5g01751 892 Coils Coil 321 341 - -
Vian5g01751 892 Gene3D Tetratricopeptide repeat domain 548 613 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01751 Vian-Chr5 39813174 39819847 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01751 399 734 Glycosyltransferase AT1G05670 21.408 4.60e-15 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01751 - - gmx:100787028 1331.62