Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01732 ATGTCGATGAGATCGGTGAAAGTAAGCAACATCTCTTCAGATGCAACCGAGCAAGATTTGAGGGAATTTCTTACCTTTCCTGGAAAAATTGAACATGTTGAAATGGAAAGTGACAAAGGAAGTTCCAAAGTTGCGTATGTCACCTTCAGTACTCCAGATGGAGCAGAAACTGCAGTTCTTCTCTCGGGAGCAGTTGTGTGTGGACAGTCTCTAAACATCGAATTGGCTAAGGATTATGCTCTGCCTACCTCGACTCATTATGCTTTGCCTTCTTCGACCGCATCTCCAACTAGTAATGCTGAGAGTGGGGAATCTGGTATGAGAAAGGCAGAGGATGTTGTAAGCAGCATGTTAGCCAAGGGCTTCATTTTGGGTAAAGATGCATTGAACCGAGCAAAATCCTTTGATGAAAGGCACAGACTTACTTCCACGGCCTCAGCAAAAGTTGCTTCTTTGGACCAGAAGGTGGGATTTACTGAAAAGATCAGTGCTGGTACAGTTATAGTGAATGACAAGGTGAAAGAAATGGATGAGAAATTTCAAGTCTCAGAGAAGACTAAAACTGCAATTTCAGCAGCTGAGCAGTCAGTGTCCAGTGCTGGATCTGCCATAATGAAGAATCGGTATGTGTTGACTGGGGCTACATGGGTCACAGGTGCTTACAACAGGGTTGCAAGGAAGGCTGAGGAAGTGGGACAGAAAACTAAGGAGAAGGTTTTGGCGCAGAATAATCAAGGAAAAACTGAAGAAGGTCATGTCCACACCAGCATGTCGGAACCCACGACAACTGATCAAACCTCCAAACAGGCAACCACGGTCAATGAACCCTCAAAACCTGAACCTCAACAGGCCACCACAGTTGATCCACCCTCCAAATCTGAAACTCAGCAGGCCACAACAGTTAATGAACCCTCCAAACCTGAACCTCAAGTGGCCACCATAATTAACGAATCCTCCAAACCTGAACCTCAAGTGGCCACCACAGTTAACGAACCCTCCAAACCTGAACCTCAACAGTTAACCAAGGATGGTCAATCTGCCAGTCCAGCAAAATCTAGTGCCTGA 1065 0.4573 MSMRSVKVSNISSDATEQDLREFLTFPGKIEHVEMESDKGSSKVAYVTFSTPDGAETAVLLSGAVVCGQSLNIELAKDYALPTSTHYALPSSTASPTSNAESGESGMRKAEDVVSSMLAKGFILGKDALNRAKSFDERHRLTSTASAKVASLDQKVGFTEKISAGTVIVNDKVKEMDEKFQVSEKTKTAISAAEQSVSSAGSAIMKNRYVLTGATWVTGAYNRVARKAEEVGQKTKEKVLAQNNQGKTEEGHVHTSMSEPTTTDQTSKQATTVNEPSKPEPQQATTVDPPSKSETQQATTVNEPSKPEPQVATIINESSKPEPQVATTVNEPSKPEPQQLTKDGQSASPAKSSA 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01732 354 MobiDBLite consensus disorder prediction 87 108 - -
Vian5g01732 354 Gene3D - 1 81 IPR012677 -
Vian5g01732 354 MobiDBLite consensus disorder prediction 228 354 - -
Vian5g01732 354 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 4 242 - -
Vian5g01732 354 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 78 IPR000504 GO:0003723
Vian5g01732 354 MobiDBLite consensus disorder prediction 237 354 - -
Vian5g01732 354 SUPERFAMILY RNA-binding domain, RBD 3 80 IPR035979 GO:0003676
Vian5g01732 354 MobiDBLite consensus disorder prediction 87 104 - -
Vian5g01732 354 SMART rrm1_1 5 74 IPR000504 GO:0003723
Vian5g01732 354 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7 70 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01732 Vian-Chr5 39666032 39668377 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01732 - - vum:124839032 655.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01732 5 39666032 39668377 Vian5g01732 5 39666032 39668377 ECH