Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01730 ATGAGCGAAAATCTGATGGGAAGAGTGAACGCTTTGGGGGAGCGACTGAAAATTGGAGGAGCTGAGGTGGGTCGGAAGATGAGTGCTGGAATGAGTTCTGTAGGCTTCAAAGTCAAAGAGTTTTTCCAGGATTCAAGCCATGCCGATAAACTCGTTGGGGAAGCTACCTCTGAGACCCTTCATCACCCTCACTGGCCCATCATTCTTCATCTGTGTGATCTGATCAATGGTGATCAGCTTAACACTGCTGAAGCGGTTCGTGCTATAAAGAAAAGGGTTGTTTCCAAGAGTCATAGAACTCAGTATCTGGCTCTGGTTCTGCTTGAAGCACTGGTCAAGAACTGTGACAAGGCTTTCTTGGAGGTGGCAACTGAGAGAGTCCTTGATGAAATGGTCAAGCTCATTGATGACCCTTATACTTTTGTTAATAACAGGAACAAGGCTTTGATGATGATTGAAGCTTGGGGAGAGTCAACTACTGAACTTCGCTATCTTCCTGTCTATGCACAAACTTTCAAGAGTTTGAAATCGAGGGGTATTCTATTCCCCGGTCGTGACAACGAAAGTTTGGCTCCTATTTTCACTCCACCTCGTTCTGGCACTGCTCCAGAGGCAGATGTCAGTCTTGAACATCTTATGCAGCATAATGTACAGAGTTTTTCGCCTGTTACTCCTTCTCGTTCTGCCTCTACTTCAGAGGCTGATGTCAATCTTGCACATCTTATGCACCATGACGTTCATGTCAAAAGCTTTACGTCTCAACAAACAGAGGAAGCTTTTGATGTTGCGAGAAACAGCTTTGAGCTTCTTTCTACCGTGTTATCTTCTTCAACGCAGAAGGATGTTCTAAAGGTATTCTCCTTTGTTTTCGTTGAGTACTGGTTGCATTCTTATGTTTCCTTTCGCTTGAAACTTGACATCGACCACAATATTCAAAGACCATGCGATCTTAGCTCTTTACTGTAA 966 0.441 MSENLMGRVNALGERLKIGGAEVGRKMSAGMSSVGFKVKEFFQDSSHADKLVGEATSETLHHPHWPIILHLCDLINGDQLNTAEAVRAIKKRVVSKSHRTQYLALVLLEALVKNCDKAFLEVATERVLDEMVKLIDDPYTFVNNRNKALMMIEAWGESTTELRYLPVYAQTFKSLKSRGILFPGRDNESLAPIFTPPRSGTAPEADVSLEHLMQHNVQSFSPVTPSRSASTSEADVNLAHLMHHDVHVKSFTSQQTEEAFDVARNSFELLSTVLSSSTQKDVLKVFSFVFVEYWLHSYVSFRLKLDIDHNIQRPCDLSSLL 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01730 321 Pfam VHS domain 46 179 IPR002014 GO:0035091|GO:0043130
Vian5g01730 321 CDD VHS 48 177 - -
Vian5g01730 321 Gene3D - 39 200 IPR008942 -
Vian5g01730 321 SMART VHS_2 48 179 IPR002014 GO:0035091|GO:0043130
Vian5g01730 321 SUPERFAMILY ENTH/VHS domain 44 183 IPR008942 -
Vian5g01730 321 ProSiteProfiles VHS domain profile. 55 183 IPR002014 GO:0035091|GO:0043130
Vian5g01730 321 PANTHER TOM1-LIKE PROTEIN 1 1 284 IPR044836 GO:0035091|GO:0043130|GO:0043328
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01730 Vian-Chr5 39658078 39659485 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01730 - - gmx:100784925 437.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01730 5 39658078 39659485 Vian5g01730 5 39658078 39659485 ECH