Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01719 ATGGCCGCCGAGAAGCTCCGGGATTTGAGTCAGCCGATTGACGTTCCCCTCCTCGATGCCACCGTCGCTGCTTTCTATGGCACCGGATCTAAAGAAGAGAGAAATGCCGCTGATCAGATTCTGCGTGACTTGCAAAACAATCCTGATATGTGGTTACAAGTCATGCATATTTTGCAAAATACTCAGAATCTGAATACTAAGTTCTTTGCCTTACAGGTTCTAGAAGGTGTAATTAAGTATAGATGGAATGCATTACCTGTTGAACAGCGAGATGGAATGAAAAATTTCATCTCTGATGTCATTGTACAGCTTTCTGGCAATGATGCTTCATTTCGATCAGAAAGGCTGTATGTCAACAAACTCAACATTATATTAGTTCAGATTTTGAAGCATGAATGGCCAGCAAGATGGCGAAGTTTTATTCCCGACCTTGTCTCTGCAGCTAAAACTAGTGAAACAATTTGTGAAAATTGTATGGTTATATTGAAACTTTTGAGTGAAGAGGTTTTTGATTTTTCAAGAGGTGAGATGACCCAGCAGAAGATAAAAGAGCTTAAACAATCTTTGAACAGTGAATTTCAACTCATTCATGAGTTATGCTTGTATGTGTTATCAGCCTCCCAAAGGACCGAACTTATTCGAGCGACTCTCTCTACATTGCATGCCTTTTTATCATGGATTCCCCTGGGTTATATATTTGAATCACCATTACTTGAGACACTCCTCAAATTTTTCCCACTCCCAGCATATAGGAACCTAACACTGCAGTGTTTAACTGAGGTGGCAGCCCTTCAATTTGGAAATTATTATGATGTGCAGTATGTCAAGATGTATAACATATTCATGGTCCAGTTGCAGAGTATACTCCCACCAACTTCAGATATTCCTGACGCGTATACAAAGGGCTCAACTGAGGAGCAAGCATTTATACAGAATCTGGCACTTTTCTTCACATCCTTTTACAAGGTTCACATTCGTATCCTGGAATCCACTCAAGAGAATATAGCTGCTTTGCTTGTAGGCCTTGAATATCTTATCAACATTTCTTATGTTGATGATACTGAGGTTTTTAAGGTCTGTTTGGACTACTGGAATTCCTTGGTGTCGGAGCTGTTTGAACCACACCGAAGTTTGGACAATCCTGCTGCTGCAGCAACCCTGATGGGACTTCAGGTACCAGCAATGCTCCCTGGTATGGTTGATGGACACGGTTCTCAGCTTCTTCAGCGCCGACAACTGTATGCCGGTCCCATGTCAAAGCTGAGAATGCTCATGATATGTCGAATGGCAAAACCTGAAGAAGTTCTCATAGTTGAAGATGAAAACGGGAACATTGTTCGTGAAACCTTGAAAGACAATGATGTTCTTGTTCAGTACAAGATTATGAGGGAGACTCTTATTTATTTATCACATCTTGATCATGATGATACTGAAAAGCAGATGCTGAGGAAATTGAGTAAGCAGCTTAGTGGTGAGGATTGGACATGGAACAATTTAAATACACTATGCTGGGCAATAGGTTCTATATCCGGTTCTATGATGGAAGAACAGGAAAACAGATTTTTGGTTATGGTCATTCGTGACTTATTAAACCTTTGTGAAATTACAAAGGGAAAAGATAACAAAGCTGTTATTGCAAGTAATATCATGTATGTTGTGGGCCAGTATCCAAGATTTTTAAGAGCTCATTGGAAATTCCTTAAAACTGTTGTGAATAAGTTGTTTGAGTTTATGCATGAGACACATCCTGGAGTTCAGGATATGGCTTGTGACACATTTCTGAAAATAGTGCAGAAGTGCAAGCGTAAATTTGTGATCACTCAGGTTGGGGAAAATGAACCGTTTGTGTCTGAGCTTCTGACAGGCCTTCCCACCACCATTATGGATCTTGAACCTCATCAAATACATTCCTTCTATGAATCTGTTGGTCACATGATTCAGGCAGAGTCTGATGCGCAGAAGAGAGATGAATATCTTCAGCGATTGATGGAGCTCCCAAATCAGAAATGGATGGAAATTATAGGGCAGGCTCATCAAAATGTTGAGTTTTTAAAGGATCAGGATGTTATCCGGACAGTGCTTAATATATTGCAGACGAATACAAGTGTTGCATCTTCTTTAGGGACATATTTCTTGCCCCAAATCTCGATGATCTTTTTGGACATGTTGAATGTGTACAGAATGTACAGCGAGCTTATTTCAAAGAGTATTACTGAAGGGGGACCTTATACTTCTAGAACATCCTACGTGAAACTTCTACGTTCGGTCAAGAGGGAAACACTCAAGCTGATTGAGACATTCTTGGATAAGGCGGAAGACCAACCACAAATTGGCAAACAATTCGTGCCTCCAATGATGGATCCTGTTCTTGGAGATTATGCGAGGAATGTTCCTGATGCTAGGGAGTCAGAGGTTTTGTCACTGTTTGCCACAATTGTGAATAAATATAAATCTGCAATGATTGAAGATGTACCACGCATATTTGAAGCTGTCTTTCAGTGCACACTTGAGATGATTACAAAAAATTTTGAAGATTACCCAGAGCATCGCCTCAAGTTCTTCTCTCTTCTTCGTGCCATAGCTACTCATTGTTTTCCTGCATTAATCTGCCTGTCAAGTCAGCAATTGAAGCTTGTTATGGACTCTATCATATGGGCTTTTCGGCACACTGAAAGAAATATTGCTGAAACTGGGCTGAACCTGTTGTTAGAGATGCTAAAGAAGTTTCAGGGCTCAGAGTTCTGTAATCAGTTTTATCGGACATACTTTTTGACAATTGAGCAAGAGATATTCGCCGTGTTGACTGATACTTTTCACAAGCCTGGGTTCAAATTGCATGTCTTGGTGCTTCAGCATTTGTTCTGTTTGGTGGAAACTGGTGTCGTAACTGAGGCTCTTTGGGATGTTGCTACTGGTCCATATCATTACCCAAGTAATTCTGCGTTTGTACGAGAGTTTACCATAAAACTTCTAAGCACCTCATTTCCCAACATGACCGCAGCAGAGGTTACTCAATTTGTTAATGGACTCTTCGAGTCAACCAATGATCTATCTACTTTTAAAAATCATATACGAGATTTTCTTATCCAGTCCAAAGAATTTTCAGCTCAGGATAACAAAGATTTATATGCTGAAGAGGCTGCGGCTCAGAGAGAGAGAGAACGACAAAGAATGCTTTCTATTCCTGGGCTTATTGCTCCTAGCGAATTGCAAGATGAAATGGTGGACTCGTAG 3234 0.4048 MAAEKLRDLSQPIDVPLLDATVAAFYGTGSKEERNAADQILRDLQNNPDMWLQVMHILQNTQNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNFISDVIVQLSGNDASFRSERLYVNKLNIILVQILKHEWPARWRSFIPDLVSAAKTSETICENCMVILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTELIRATLSTLHAFLSWIPLGYIFESPLLETLLKFFPLPAYRNLTLQCLTEVAALQFGNYYDVQYVKMYNIFMVQLQSILPPTSDIPDAYTKGSTEEQAFIQNLALFFTSFYKVHIRILESTQENIAALLVGLEYLINISYVDDTEVFKVCLDYWNSLVSELFEPHRSLDNPAAAATLMGLQVPAMLPGMVDGHGSQLLQRRQLYAGPMSKLRMLMICRMAKPEEVLIVEDENGNIVRETLKDNDVLVQYKIMRETLIYLSHLDHDDTEKQMLRKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEITKGKDNKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVITQVGENEPFVSELLTGLPTTIMDLEPHQIHSFYESVGHMIQAESDAQKRDEYLQRLMELPNQKWMEIIGQAHQNVEFLKDQDVIRTVLNILQTNTSVASSLGTYFLPQISMIFLDMLNVYRMYSELISKSITEGGPYTSRTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGKQFVPPMMDPVLGDYARNVPDARESEVLSLFATIVNKYKSAMIEDVPRIFEAVFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALICLSSQQLKLVMDSIIWAFRHTERNIAETGLNLLLEMLKKFQGSEFCNQFYRTYFLTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLVETGVVTEALWDVATGPYHYPSNSAFVREFTIKLLSTSFPNMTAAEVTQFVNGLFESTNDLSTFKNHIRDFLIQSKEFSAQDNKDLYAEEAAAQRERERQRMLSIPGLIAPSELQDEMVDS 1077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01719 1077 Pfam Chromosome region maintenance or exportin repeat 337 372 IPR041123 -
Vian5g01719 1077 Pfam CRM1 / Exportin repeat 3 491 540 IPR040485 -
Vian5g01719 1077 ProSiteProfiles Importin-beta N-terminal domain profile. 37 103 IPR001494 GO:0006886|GO:0031267
Vian5g01719 1077 PANTHER EXPORTIN 1/5 4 1075 IPR045065 GO:0005049|GO:0006611
Vian5g01719 1077 Pfam Importin-beta N-terminal domain 37 103 IPR001494 GO:0006886|GO:0031267
Vian5g01719 1077 Pfam Exportin 1-like protein 115 258 IPR013598 -
Vian5g01719 1077 Pfam CRM1 / Exportin repeat 2 410 477 IPR041235 -
Vian5g01719 1077 SMART IBN_N_2 37 103 IPR001494 GO:0006886|GO:0031267
Vian5g01719 1077 SUPERFAMILY ARM repeat 22 1026 IPR016024 -
Vian5g01719 1077 FunFam protein EXPORTIN 1A 1 1061 - -
Vian5g01719 1077 Gene3D - 1 1060 IPR011989 -
Vian5g01719 1077 Pfam CRM1 C terminal 714 1035 IPR014877 GO:0005049
Vian5g01719 1077 SMART CRM1_C_2 714 1036 IPR014877 GO:0005049
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01719 Vian-Chr5 39571727 39583689 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01719 K14290 - gmx:100813443 2065.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01719 5 39571727 39583689 Vian5g01719 5 39571727 39583689 ECH