Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01717 ATGCAAGACACTAAAAAAGCTGTTACATTCTATAGGCCTGTAGGAGTACCTGATAGTTTTCGTATTCTTGGTCATTATTGTCAATCCAGTAACAAGCCTTTAAGGGGTTTTGTACTTGTTGCAAGGGAAGTTGAAACTTCTGATAGTAACAATCAAGATAAGTTACCTCCTATGAAGAATCCCCTTGATTTTAGTTTGGTTTGGGGTGAAAATGGAAGAAGTTTGAAAACTTTAGGCGTATACTTTTGGGTACCTGAACCTCCTGCAGGTTACAAGGCCCTTGGATGTTTGGTTACTACCAAACCTGTGAAGCCTTTTTTGGATGAAATGTGCTGTGTTCGTACCGATCTCACCTATAGATGTGACCCTTATCGCCAAATACTCACTGCTGGCTCAACAGTTCCGGAGTTTTCATTTCAGGTGTGGAGTTTGAGACCTTGTGATCGTGGCATACTAGGGAAAGGAGTTTCTGTTGGGACTTTTTTCTGCAGCAATGGCTGGTGGACCGTGAGAGAAGATGTACCTGTTGCATGCTTGAAGAATTTAAATCCTGCATTGCAAGCAATGCCAAATTTGCAACAAATACATGCACTTATTAAGCATTATGGCCCTACTATTTTCTTTCATCCTAAGGAAATTTACTTGCCATCTTCTGTGGAATGGTTTTTCAACAATGGAGCAGTTTTGTACACAAAGGGTGTATCTGCAGGAGAGAAAATTGATGCAAATGGATCAAATCTACCAGGTGGGGGAACAAATGATGGTCAATATTGGATAGATTTGCCAAGAGATGATAAAAGGGAGCTTGTCAAACGTGGGAACTTGAAAAGTGCAAAGCTTTATGTTCATGTGAAGCCTGTTTTTGGAGGAACTTTTACTGACATTGCAATGTGGGTGTTTTGCCCTTTCAATGGACCAGCCACTCTGAAAATTGGAATCAAGGATATTCCTTTGAGCAGGATTGGAGAGCATGTTGGTGATTGGGAGCATTTTACACTTCGCATAAGCAACTTCAGTGGAGAACTCTACAGTATATACTTCTCACAGCACAGTGGTGGTGAATGGGTGGATGCATGTGACTTGGAATATATTGAAGGTAATAAAGCTATTGTTTACTCATCAAAATCTGGACATGCAAGTTACCCTCATGCTGGTACCTGCATCCAAGGTTCTTCAAAACTTGGCATTGGCATTAGGAATGATGCTGCCCGCAGTAATTTGTATGTGGATTCTAGTATTCAGTATGAGCTTGTTGCAGCTGAGTATCTTGAAAATGAGATCACTGAACCTCAATGGTTGCAATTTATGAGAGAATGGGGCCCCAAAATTGTTTATGATTCAAAAACTGAGCTGGATAAGGTAATCAATGCTCTTCCTCGGCTGCTCAAGTATTCTGTGAAGGGCTTATTTAACAAGTTCCCAGTGGAACTTTATGGTGAGGAAGGTCCCACTGGGCCAAAAGAGAAAAATAATTGGTTACAGGATGAAAGATGGTGA 1497 0.4088 MQDTKKAVTFYRPVGVPDSFRILGHYCQSSNKPLRGFVLVAREVETSDSNNQDKLPPMKNPLDFSLVWGENGRSLKTLGVYFWVPEPPAGYKALGCLVTTKPVKPFLDEMCCVRTDLTYRCDPYRQILTAGSTVPEFSFQVWSLRPCDRGILGKGVSVGTFFCSNGWWTVREDVPVACLKNLNPALQAMPNLQQIHALIKHYGPTIFFHPKEIYLPSSVEWFFNNGAVLYTKGVSAGEKIDANGSNLPGGGTNDGQYWIDLPRDDKRELVKRGNLKSAKLYVHVKPVFGGTFTDIAMWVFCPFNGPATLKIGIKDIPLSRIGEHVGDWEHFTLRISNFSGELYSIYFSQHSGGEWVDACDLEYIEGNKAIVYSSKSGHASYPHAGTCIQGSSKLGIGIRNDAARSNLYVDSSIQYELVAAEYLENEITEPQWLQFMREWGPKIVYDSKTELDKVINALPRLLKYSVKGLFNKFPVELYGEEGPTGPKEKNNWLQDERW 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01717 498 Pfam Vacuolar protein sorting-associated protein 62 2 496 IPR009291 -
Vian5g01717 498 PANTHER BNAC01G40110D PROTEIN 2 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01717 Vian-Chr5 39560413 39561909 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01717 - - gmx:100793026 852.047