Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01710 ATGACGACGTCGTTCGGTGCAGCTACCACATCGGCGGCGCTGAAGGACGCCAAGCTTCAGATCCCAAACTTCCATGGCTTGAGGCCTGCCGCCGCCTCTTCTCTCACGCGCAATGCTCTCCCGCTTCCTTCATCCACGCGTTCTCTCGTCATCACACGTGCCCCCGTGCAGCCTGAAACTACCACTGTAAAGCGCAGCAAAGTTGAAATATTCAAAGAACAAAGCAATTTCATAAGATATCCTCTGAATGAGGACATGTTGACGGATGCCCCTAATATAGGTGAGGCTGCCACTCAGTTGATCAAGTTTCATGGAAGCTATCAACAGTACAATAGAGAAGAGCGTGGTTCTCGGAGCTACTCTTTCATGATACGTACTAAGAACCCTTGTGGGAAGGTTTCAAACCAACTTTACTTGACCATGGACGATCTTGCTGACCAGTTTGGGATTGGGACGCTTCGGCTCACCACCAGACAAACTTTTCAGCTCCATGGTGTTCTTAAGAAGGATCTTAAAACAGTGATGGGTACCATTATTAGAAATATGGGCTCGACTCTTGGTGCGTGTGGTGACCTAAACAGGAATGTGCTTGCTCCTGCTGCGCCCCTCGTGAGAAAGGATTATCTTTTGGCTCAGGAGACTGCGGAAAACATTGCTGCGCTCCTGTCTCCCCAGTCTGGTTTCTACTATGATATTTGGGTAGACGGAGAAAAGATTTTGTCATCAGAACCGCCTGAAGTAGTTCAGGCACGGAATGACAATTCTCATGGGACAAATTTCCCAGATTCACCGGAGCCCATCTACGGTACTCAGTTCTTGCCAAGGAAATTCAAAATTGCTGTTACAGTACCAACTGATAACTCGGTGGACATTCTCACAAATGACATTGGTGTTGTTGTTGTCACCGATGAAGCAGGGGAGCCTCAAGGGTACAACATATATGTAGGTGGAGGAATGGGAAGAACTCATAGGGTAGAAACCACTTTTCCTCGCTTGGCCGAACCGTTAGGTTATGTACCAAAGGAGGATATTTTGTATGCAGTGAAGGCAATTGTTGTCACACAACGAGAAAATGGGAGACGAGATGACCGCAGGTATAGTAGAATGAAATATCTGATCAGCTCTTGGGGAATTGAAAAGTTTAGAAGCGTGGTTGAGCAGTATTATGGCAAGAAATTTGAACCTTTCCGTGTATTGCCAGAATGGGAATTTAAAAGTTATCTTGGCTGGCATGAACAGGTTGGTTCTCTAGATGATCGAATAAAAGCAATGTCTCTATCTGAGATGGATCTTATACTTGCTTTATTGCCTTTGATGTGTGTACTTGTTTCAGTTCTGATATGCCTGAAAAAATATCCTTTGTATGTTGTTAAGCATTCTGTTGTTGGCTCATTCTTTGGTGTTATTGGTGATGGCAAATTATTTTATGGGCTTCATGTTGATAATGGTCGAATTGGTGGAAAGATGAAAAAGACATTGAGGGAGGTTATTGAGAAGTATAATTTGAATGTGAGAATCACTCCAAATCAGAACATCATCTTGACTGATGTTCGTTCTTCATGGAAGCGTCCAATTACAACAACTCTTGCTCAGGCTGGTCTGCTGCAACCTAGATTTGTAGATCCCCTCAACATAACAGCAATGGCATGCCCTGCTTTCCCATTATGTCCACTTGCAATTACTGAAGCTGAACGTGGGATACCTGACATTCTTAAGCGTATTCGGGCTGTTTTTGATAAGGTTGGTCTGAGGTATAGTGAGTCTGTAGTTGTAAGGATAACTGGATGCCCTAATGGCTGCGCTAGACCATACATGGCTGAACTTGGGCTAGTTGGTGATGGCCCAAATAGTTACCAGATTTGGCTTGGAGGGAACAAGAAACAAACATCATTAGCTCGAAGTTTCATGGACAAGGTGAAGCTTCACGACCTTGAAAATGTTTTGGAACCTTTACTTTATTATTGGAAGCAAAGACGTCAATCTAAAGAATCATTTGGTGACTTCACAAACAGAATGGGATTTGATAAGCTTAAGGAACATGTTGAGAAATGGGAAGGTCCGGTGGTTGCACCATCACGCCACAATCTCAAGCTTTTTGCCGACAAGGAGACGTACGATGCAATGGATGAATTGGCAAAGCTTCAAAACAAAAGTGCTCATCAGTTGGCCATGGAAATTATCCGTAATTATGTTGCTTCTAACCAAAATGGAAAAGGTGAATGA 2223 0.4386 MTTSFGAATTSAALKDAKLQIPNFHGLRPAAASSLTRNALPLPSSTRSLVITRAPVQPETTTVKRSKVEIFKEQSNFIRYPLNEDMLTDAPNIGEAATQLIKFHGSYQQYNREERGSRSYSFMIRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMGTIIRNMGSTLGACGDLNRNVLAPAAPLVRKDYLLAQETAENIAALLSPQSGFYYDIWVDGEKILSSEPPEVVQARNDNSHGTNFPDSPEPIYGTQFLPRKFKIAVTVPTDNSVDILTNDIGVVVVTDEAGEPQGYNIYVGGGMGRTHRVETTFPRLAEPLGYVPKEDILYAVKAIVVTQRENGRRDDRRYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRVLPEWEFKSYLGWHEQVGSLDDRIKAMSLSEMDLILALLPLMCVLVSVLICLKKYPLYVVKHSVVGSFFGVIGDGKLFYGLHVDNGRIGGKMKKTLREVIEKYNLNVRITPNQNIILTDVRSSWKRPITTTLAQAGLLQPRFVDPLNITAMACPAFPLCPLAITEAERGIPDILKRIRAVFDKVGLRYSESVVVRITGCPNGCARPYMAELGLVGDGPNSYQIWLGGNKKQTSLARSFMDKVKLHDLENVLEPLLYYWKQRRQSKESFGDFTNRMGFDKLKEHVEKWEGPVVAPSRHNLKLFADKETYDAMDELAKLQNKSAHQLAMEIIRNYVASNQNGKGE 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01710 740 ProSitePatterns Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 594 610 IPR006066 GO:0016491|GO:0020037|GO:0051536
Vian5g01710 740 FunFam Sulfite reductase [ferredoxin], chloroplastic 189 398 - -
Vian5g01710 740 Gene3D Sulfite Reductase Hemoprotein, domain 1 194 398 IPR045854 -
Vian5g01710 740 Gene3D Sulfite Reductase Hemoprotein;Domain 2 466 536 - -
Vian5g01710 740 Pfam Nitrite and sulphite reductase 4Fe-4S domain 544 683 IPR006067 GO:0016491|GO:0020037|GO:0051536
Vian5g01710 740 Pfam Nitrite and sulphite reductase 4Fe-4S domain 215 393 IPR006067 GO:0016491|GO:0020037|GO:0051536
Vian5g01710 740 SUPERFAMILY Nitrite and sulphite reductase 4Fe-4S domain-like 190 405 IPR045854 -
Vian5g01710 740 Gene3D Sulfite Reductase Hemoprotein, domain 1 541 688 IPR045854 -
Vian5g01710 740 SUPERFAMILY Nitrite/Sulfite reductase N-terminal domain-like 61 189 IPR036136 GO:0016491
Vian5g01710 740 PANTHER SULFITE REDUCTASE [NADPH] SUBUNIT BETA-RELATED 53 413 IPR045169 GO:0016491|GO:0020037|GO:0051536
Vian5g01710 740 Coils Coil 738 740 - -
Vian5g01710 740 SUPERFAMILY Nitrite/Sulfite reductase N-terminal domain-like 470 536 IPR036136 GO:0016491
Vian5g01710 740 FunFam Sulfite reductase [ferredoxin], chloroplastic 541 691 - -
Vian5g01710 740 Gene3D Sulfite Reductase Hemoprotein;Domain 2 120 193 - -
Vian5g01710 740 PRINTS Sirohaem Fe-binding site signature 594 612 IPR006066 GO:0016491|GO:0020037|GO:0051536
Vian5g01710 740 PRINTS Sirohaem Fe-binding site signature 545 563 IPR006066 GO:0016491|GO:0020037|GO:0051536
Vian5g01710 740 SUPERFAMILY Nitrite and sulphite reductase 4Fe-4S domain-like 543 694 IPR045854 -
Vian5g01710 740 Pfam Nitrite/Sulfite reductase ferredoxin-like half domain 121 175 IPR005117 GO:0016491
Vian5g01710 740 Pfam Nitrite/Sulfite reductase ferredoxin-like half domain 471 520 IPR005117 GO:0016491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01710 K00392 - sind:105170808 1041.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01710 5 39519634 39523369 Vian5g01710 5 39519634 39523369 ECH