Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01700 ATGAGCAGCAACATAGAAAAAGTGGTGTGTGTGACTGGTGCTTCTGGTTTCATTGCTTCATGGATCGTCAAATTCCTTCTCCAACGTGGTTACACTGTCAGAGCCACTGTTCGTAACCCAGCTAATCATGAAAAGGTTGATCACTTGCTGAAACTTGATGGAGCAAAGGAAAGGTTACATCTCTATAAGGCAGATCTTCTTGAAGAAGGATCATTTGACTCTGCTTTTGAGGGTTGTTATGGTGTTTTTCACACTGCTTCACGGGTTCAGTTCGTAGTCAACGACCCACAGAAAGAGTTGATTGATCCAGCTGTTAAAGGAACTCTTAACGTTGTTAAATCATATCCAAACATCTTAAGGGAAAATGAGAGATGGTATGCATTATCAAAGACTTTGGCTGAGGATGCTGCCAGAAAATTTTTGGACGAACAAGACATTAAGTTGGTTGTTATTAACCCAGCAATGACCATAGGGCCTCTGCTGCAACAAGAAATGAACGGAAGTTCTTCCTCAATTTTAAAGCTAATCAATGGTTCAGAAACGTTTCCAAATTTCAGTTTTGGGTGGGTCAATGTGAAAGATGTTGCAGATGCACATGTTCAAGCATATGAGAGTGATTCAGCCAGTGGAAGATATTGTCTGGTTGAAAGAGTTGCACACTTCTCTGAAATTGTTAAAATTTTAGGTCAGATGTACCCAACTTTGAAGATTGCAGACAAGTGTGAAGATGATGAGCCATTTATGCCAACATTTCAGGTTTCCAAAGAAAAGGCAAAGAGCTTGGGAATTGAGTTTATTTCCTTGGAAGAGAGCCTTAAGGTGACAGTTGAATGTTTAAAAGAAAAGAAGTTGGTTGAGCTGTAG 864 0.3993 MSSNIEKVVCVTGASGFIASWIVKFLLQRGYTVRATVRNPANHEKVDHLLKLDGAKERLHLYKADLLEEGSFDSAFEGCYGVFHTASRVQFVVNDPQKELIDPAVKGTLNVVKSYPNILRENERWYALSKTLAEDAARKFLDEQDIKLVVINPAMTIGPLLQQEMNGSSSSILKLINGSETFPNFSFGWVNVKDVADAHVQAYESDSASGRYCLVERVAHFSEIVKILGQMYPTLKIADKCEDDEPFMPTFQVSKEKAKSLGIEFISLEESLKVTVECLKEKKLVEL 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01700 287 Pfam NAD dependent epimerase/dehydratase family 9 113 IPR001509 -
Vian5g01700 287 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 7 114 - -
Vian5g01700 287 FunFam NAD(P)-binding Rossmann-fold superfamily protein 7 120 - -
Vian5g01700 287 FunFam Os02g0811600 protein 124 287 - -
Vian5g01700 287 CDD FR_SDR_e 9 262 - -
Vian5g01700 287 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 280 IPR036291 -
Vian5g01700 287 Gene3D - 7 116 - -
Vian5g01700 287 Gene3D - 117 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01700 Vian-Chr5 39434736 39437163 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01700 7 287 Miscellaneous Gene Families AT5G19440 56.113 2.74e-128 366
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01700 - - gmx:100804704 442.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01700 5 39434736 39437163 Vian5g01700 5 39434736 39437163 ECH