Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01681 ATGGCTACTAACACCATTCACGGAAACAATGAATCTGCTCAACCCAACAACATTGCTTCCTCAAAGCAGCCTCTCCCTCCTGCCAAGACAGTTGATTCTCAATCTGTTCTCAGAAGGCTGCAATCTGAATTGATGGCTTTGATGATGAGTGGAGATTCTGGGATATCTGCATTTCCTGAAGAGGACAACATATTTTTCTGGAAAGGAACAATCAGTGGAAGCAAAGATACTGTGTTTGAAGGCACAGAGTATAAGCTGTCTCTCTCTTTTCCCAATGATTACCCTTTTAAGCCTCCAAAAGTCAAGTTTGAAACAACCTGCTTCCACCCCAATGTTGATGTGCATGGCAATATATGCTTAGACATACTCCAGGATAAATGGTCATCTGCATATGATGTCAGAACAATTCTTATATCCATCCAAAGTCTGCTTGGAGAGCCAAACATTAGTTCACCACTAAACCCACAAGCAGCACAGCTATGGAGCAATCAAGAAGAATACAGGAAGACGGTTGAGAAGTTGTACAAATCTGGAAATTGA 540 0.4167 MATNTIHGNNESAQPNNIASSKQPLPPAKTVDSQSVLRRLQSELMALMMSGDSGISAFPEEDNIFFWKGTISGSKDTVFEGTEYKLSLSFPNDYPFKPPKVKFETTCFHPNVDVHGNICLDILQDKWSSAYDVRTILISIQSLLGEPNISSPLNPQAAQLWSNQEEYRKTVEKLYKSGN 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01681 179 FunFam ubiquitin-conjugating enzyme E2 20 29 177 - -
Vian5g01681 179 SMART ubc_7 38 179 - -
Vian5g01681 179 Gene3D Ubiquitin Conjugating Enzyme 29 178 IPR016135 -
Vian5g01681 179 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 108 123 IPR023313 -
Vian5g01681 179 MobiDBLite consensus disorder prediction 1 32 - -
Vian5g01681 179 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 38 172 - -
Vian5g01681 179 SUPERFAMILY UBC-like 32 175 IPR016135 -
Vian5g01681 179 CDD UBCc 38 175 IPR000608 -
Vian5g01681 179 Pfam Ubiquitin-conjugating enzyme 39 173 IPR000608 -
Vian5g01681 179 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 35 179 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01681 Vian-Chr5 39246148 39247438 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01681 37 144 Miscellaneous Gene Families AT3G17000 31.858 4.30e-13 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01681 K06688 - gmx:100305664 330.102