Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01676 ATGAACACGCTCCTCCGATCCACTCTGAGGACTAAGAATGCTTCATCTCTAGCATATGCTGCTGTTTCCAGAGGTGTTCAGGAAAATCTTCTTCAGGCTCCCTTGTGGTCTAGATCAAATAGCACGGAGTCTTCCTTGAAAAGGGATGATTCAGCCAATGAAGTGAAAAGTGGTCCAGTGTTCAAGGGTCATAGTATGCTTGCTCCTTTCACGGCTGGGTGGCAGTCTACTGATTTGCATCCTCTGGTTATAGAAAAGTCAGAGGGAAGCTATGTGTATGATACTAATGGAAAGAAATATCTTGACGCACTTGCTGGTTTATGGGCCACCGCTTTAGGGGGAAGTGAGTCACGCCTTGTGGATGCTGCTGTCGCACAATTAAAGAAGTTGCCATTTTACCATTCCTTTTGGAATCGAACCACCGTACCTTCTCTGGAACTAGCCAAGGAACTCCTAGAAATATTCACAGCCAGAAAAATGGCAAAAGCTTTTTTTGTTAACAGTGGATCAGAAGCCAATGACACTCAGGTGAAACTTGTATGGTATTATAACAATGCGCTTGGAAGGCCAAATAAGAAGAAGTTCATAGCTCGTGCTAAATCGTATCACGGTTCAACATTGATAGCAGCCAGTCTTTCCGGTCTTCCGGCTCTTCATCAGAAATTTGATTTACCAGCACCTTTTGTATTGCATACTGACTGTCCACACTACTGGCGGTATCATCTTCCAGATGAGACAGAGGAAGAATTTTCAACCAGATTGGCCAACAATTTAGAGCTGCTGATTCTGAAAGAGGGGCCAGAGACAATAGCTGCATTTATTGCTGAACCTGTAATGGGGGCAGGAGGTGTAATACCTCCCCCAGCAACTTATTTTGAGAAGGTTCAAGCTGTTGTCAAGAAGTATGACATTCTTTTTATTGCTGATGAGGTAATCTGTGCCTTTGGAAGGCTTGGGACAATGTTTGGATGTGACAGGTACAACATTAAGCCGGACCTTGTATCCCTGGCTAAGGCATTGTCTTCTGCATATTTGCCAATTGGAGCTGTGCTTGTGAGCCCAGAAGTTTCAGAAGTTATACACGCACAAAGTAACAAACTTGGTTCATTTTCTCATGGGTTTACTTATTCTGGACACCCCGTAGCCTGTGCTGTTGCAATTGAAGCTCTCAAAATCTACAAGGAAAGAAATATTGTTGACCAGGTGAACAAGATCTCCCAAAGGTTCCAAGATGGCATAAGAACTTTTTCTGACAGTCCCATCATTGGAGAGATACGAGGAGTTGGCTTGATTTTGGGCACCGAGTTCACAGACAACAAATCACCTAATGATCCGTTTCCTTCTGAATGGGGAATAGGTGCCCATTTTGGAGCTCAATGTGAGAAGCATGGGATGTTAGTTCGTGTAGCGGGAGATAGCATCATGATGTCTCCACCATATATTATTTCTCCTGAAGAAGTTGACACATTAATCAGTATTTATGGGAAAGCTTTGAAAGAAACGGAAAAGAAGGTGCAAGAGCTCAAGTCTCAGCGCAAGTAG 1542 0.4358 MNTLLRSTLRTKNASSLAYAAVSRGVQENLLQAPLWSRSNSTESSLKRDDSANEVKSGPVFKGHSMLAPFTAGWQSTDLHPLVIEKSEGSYVYDTNGKKYLDALAGLWATALGGSESRLVDAAVAQLKKLPFYHSFWNRTTVPSLELAKELLEIFTARKMAKAFFVNSGSEANDTQVKLVWYYNNALGRPNKKKFIARAKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYHLPDETEEEFSTRLANNLELLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDRYNIKPDLVSLAKALSSAYLPIGAVLVSPEVSEVIHAQSNKLGSFSHGFTYSGHPVACAVAIEALKIYKERNIVDQVNKISQRFQDGIRTFSDSPIIGEIRGVGLILGTEFTDNKSPNDPFPSEWGIGAHFGAQCEKHGMLVRVAGDSIMMSPPYIISPEEVDTLISIYGKALKETEKKVQELKSQRK 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01676 513 PANTHER ADENOSYLMETHIONINE-8-AMINO-7-OXONONANOATE AMINOTRANSFERASE 52 500 - -
Vian5g01676 513 SUPERFAMILY PLP-dependent transferases 67 500 IPR015424 -
Vian5g01676 513 CDD OAT_like 76 498 IPR005814 GO:0008483|GO:0030170
Vian5g01676 513 Gene3D Aspartate Aminotransferase, domain 1 82 498 IPR015422 GO:0003824
Vian5g01676 513 Pfam Aminotransferase class-III 80 497 IPR005814 GO:0008483|GO:0030170
Vian5g01676 513 FunFam Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, probable 116 396 - -
Vian5g01676 513 FunFam Class III aminotransferase 67 115 - -
Vian5g01676 513 PIRSF Transaminase_4ab_Lys_Orn 72 501 IPR005814 GO:0008483|GO:0030170
Vian5g01676 513 ProSitePatterns Aminotransferases class-III pyridoxal-phosphate attachment site. 306 343 IPR005814 GO:0008483|GO:0030170
Vian5g01676 513 Coils Coil 491 513 - -
Vian5g01676 513 Gene3D - 116 398 IPR015421 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01676 Vian-Chr5 39180759 39188369 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01676 K16871 - gmx:100815181 937.947