Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01663 ATGGAGACAGATAGTGGGAGGCTGAGCAGGAAGAAAAGTGGTGGAAACGGACAGGTTCTAGACGGTTCCAATATTATGGAGTTGGTTGGAAACGACCAGGTTTTCACCACCTTCGTCGACAATAAGTTCCACGAGTTAGACACAGACAGAGATGGCAAACTCTCTGTGAAAGAGCTCCAACCTGCTGTTGCTGACATAGGTGCTGCTCTCGGCCTTCCTCCTCACGGCACCAATCCTGATTCTGATCACATATATTCCGAGGTGTTGAATGAATTCACTCATGGGAAGCAGGAAAAAGTGAGCAAAACTGAGTTCAAAGAGGTTCTCTCTGATATTCTCTTGGGTATGGCTGCTGGACTGAAGCGTGACCCAATTGTGATACTTCGCATTGATGGAGAAGATCTTCTGGAATTTGTTAATGGTTCGGCTTATGAAGCAGAAATGGCGTTTATATTCTCTCATATTGAATCCCCTAACAGATCACTGCATGACCATGTAATTGAAGCTCTTGGCAAGCTCACTGTGGAACAAGGAATTCCTCCTACAGCAGATTCTTGGGTTTTAAGCAACATTGTAGAACCGGCACTGCTATCTCTAGATAGATCTGGTTTGGACAAGCCTGTTTCTCAGGAGACATTTTTGGAGGAATTTAAGGTAGTGGCATTGGCTGTGGCGAATCGTCTTAAGGAGCAACCAGTCATAGTTGCTCACAGTGAGAACATCTTTGATGGAAGTGGTGTTAAGAGACTACTATCCAACAAGTTTGAATTAGACAAGACTTTGAACTCAGCTTTAGAGACTTTGCCTAAAGATCGAAATGGAAAGATGTCAAAAGAGTATCTACGAGTGGCACTGGACGCGCTGGCTCCATCTGCTGGTTTACCTCCCCTTGGTGCCATTGAAGAGATGGATAAGGTTATTGATGAAGTGTTTAAGATGGTGAATGCAGATGAAGCGAAGATGGTGAAAGAAGAGGAGTTCAAGAAAGTTTTAACTGAAATACTGGGGAGCATTATGTTGCAGTTGGAGGGAAGTCCCATATCGGTTTCTTCAAATTCAGTAGTGCACGAGCCTCTAGACTCATCTTCTACACTTCTTCAGCCATCCTCTAGTGAAACTGCACCCTAG 1128 0.4433 METDSGRLSRKKSGGNGQVLDGSNIMELVGNDQVFTTFVDNKFHELDTDRDGKLSVKELQPAVADIGAALGLPPHGTNPDSDHIYSEVLNEFTHGKQEKVSKTEFKEVLSDILLGMAAGLKRDPIVILRIDGEDLLEFVNGSAYEAEMAFIFSHIESPNRSLHDHVIEALGKLTVEQGIPPTADSWVLSNIVEPALLSLDRSGLDKPVSQETFLEEFKVVALAVANRLKEQPVIVAHSENIFDGSGVKRLLSNKFELDKTLNSALETLPKDRNGKMSKEYLRVALDALAPSAGLPPLGAIEEMDKVIDEVFKMVNADEAKMVKEEEFKKVLTEILGSIMLQLEGSPISVSSNSVVHEPLDSSSTLLQPSSSETAP 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01663 375 ProSiteProfiles EF-hand calcium-binding domain profile. 34 69 IPR002048 GO:0005509
Vian5g01663 375 PANTHER CALCIUM-BINDING EF-HAND FAMILY PROTEIN-RELATED 130 354 - -
Vian5g01663 375 MobiDBLite consensus disorder prediction 1 22 - -
Vian5g01663 375 Gene3D - 18 120 - -
Vian5g01663 375 SMART efh_1 38 66 IPR002048 GO:0005509
Vian5g01663 375 SMART efh_1 260 288 IPR002048 GO:0005509
Vian5g01663 375 SMART efh_1 306 334 IPR002048 GO:0005509
Vian5g01663 375 MobiDBLite consensus disorder prediction 350 375 - -
Vian5g01663 375 Gene3D - 199 338 - -
Vian5g01663 375 Pfam EF-hand domain pair 42 108 IPR002048 GO:0005509
Vian5g01663 375 ProSitePatterns EF-hand calcium-binding domain. 47 59 IPR018247 -
Vian5g01663 375 SUPERFAMILY EF-hand 42 343 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01663 Vian-Chr5 39058097 39061112 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01663 18 373 EF-hand Containing Proteins AT4G38810 68.245 2.97e-172 483
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01663 - - gmx:100820516 647.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01663 5 39058097 39061112 Vian5g01663 5 39058097 39061112 ECH