Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01650 ATGGTCCAACCGGCGATGACGCAGTTCCTCAACTCCGTTCTCTCTCAGCGCGGCCCCTCCGCCGTCCCTTACTCCGAGGACACCAAGTGGCTCATCCGCCAGCACCTCGTCGCGCTAACATCTACCTTCCCTTCGCTCGAGCCCAAAACGGCCGCCTTCACGCATAACGACGGTCGTTCCGTCAACCTCCTTCAGGCCGACGGCACCATCCCCATGTCGTTTCAAGGTGTCACCTACAACATCCCCGTCGTCATCTGGCTCATGGAGTCCTACCCTCGTCACCCGCCCTGCGTCTATGTGAATCCCACGCGCGACATGGTCATCAAACGCCCCCACCCTCATGTTAACCCTTCTGGTTTGGTTTCCGTTCCTTACTTGCAGAATTGGACCTACCCTAGTTCCAACCTTGTCGGTCTCGTTCTCAATCTCAGCCACCACTTCGGTCGCGACCCTCCCCTCTATTCCCAACGCAGACCTAACCCTAACCCGAACCCTAATCCCAACCCCAATCCTAATCCAAATCCTCACCCTCACCCCCATCCCAGTTTCGGAAACTCTTCCTCCAATTTATCTTCTAACTCTTCTTCTTCATCTGGCTACCCCCACGCTCAACCCCCCGCTAGGCCTTACCCTCCTTCCCCTTACCCTGCTCCCGCTTCTAGGGTTCAGTCCACTGAGGATCCTTCTGAGGTTTTCAAGCGGAACGCGATTAACAAGCTTGTGGAGATGGTTCATGGGGATGTTTCCGCGTTGAGGAAGACCAGGGAGGGTGAGATGGAGGGGCTGTTTAATTTGCAGGGCGTGTTAAAGCAGCGGGAGGAGACTCTCAACAAGGGGTTGAAGGAGATGCAGGAGGAGATGGAGGCGCTGGAGCAGCAGTTGCAGATTGTGTTGATGAACACTGATGTTTTGGAGGGGTGGTTGAGGGATAACCAGGGGAAGAAGCTGGGTGGTTTGGACAATCCTGAGGATGCTTTTGAGTGTGTGGATGTACTGTCCAAGCAGATGCTTGACTGCACTGCTGCTGATTTGGCTATCGAGGACACGCTTTATGCGTTGGATAAGTCTCTTCAAGTGGGATCTGTGCCGTTTGATCAGTATTTGAGGAGTGTGAGGGCGTTATCCAGGGAACAGTTCTTTCACCGCGCCACCACAGCGAAAGTTAGAGCGGCCCAGTTGCAAACTCAGGTTGCCAATATGGCTGCTCGGAATCACCATTATGGTAGCTGA 1230 0.5447 MVQPAMTQFLNSVLSQRGPSAVPYSEDTKWLIRQHLVALTSTFPSLEPKTAAFTHNDGRSVNLLQADGTIPMSFQGVTYNIPVVIWLMESYPRHPPCVYVNPTRDMVIKRPHPHVNPSGLVSVPYLQNWTYPSSNLVGLVLNLSHHFGRDPPLYSQRRPNPNPNPNPNPNPNPNPHPHPHPSFGNSSSNLSSNSSSSSGYPHAQPPARPYPPSPYPAPASRVQSTEDPSEVFKRNAINKLVEMVHGDVSALRKTREGEMEGLFNLQGVLKQREETLNKGLKEMQEEMEALEQQLQIVLMNTDVLEGWLRDNQGKKLGGLDNPEDAFECVDVLSKQMLDCTAADLAIEDTLYALDKSLQVGSVPFDQYLRSVRALSREQFFHRATTAKVRAAQLQTQVANMAARNHHYGS 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01650 409 Pfam UEV domain 33 153 IPR008883 GO:0015031|GO:0036211
Vian5g01650 409 Coils Coil 273 300 - -
Vian5g01650 409 Gene3D - 331 391 - -
Vian5g01650 409 PANTHER TUMOR SUSCEPTIBILITY GENE 101 PROTEIN-RELATED 1 397 - -
Vian5g01650 409 MobiDBLite consensus disorder prediction 181 202 - -
Vian5g01650 409 SUPERFAMILY Endosomal sorting complex assembly domain 330 390 IPR037202 -
Vian5g01650 409 MobiDBLite consensus disorder prediction 204 218 - -
Vian5g01650 409 ProSiteProfiles UEV domain profile. 13 157 IPR008883 GO:0015031|GO:0036211
Vian5g01650 409 MobiDBLite consensus disorder prediction 150 229 - -
Vian5g01650 409 Pfam Vps23 core domain 325 387 IPR017916 -
Vian5g01650 409 Gene3D Ubiquitin Conjugating Enzyme 1 154 IPR016135 -
Vian5g01650 409 SUPERFAMILY UBC-like 15 153 IPR016135 -
Vian5g01650 409 ProSiteProfiles Steadiness box (SB) domain profile. 330 398 IPR017916 -
Vian5g01650 409 MobiDBLite consensus disorder prediction 156 180 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01650 K12183 - gmx:100778834 647.121