Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01632 ATGAGAGGTTTTGCGCGATCGAACTCGTTGATGAGGAAGTTGTTCCATGGAAGGAACGTTCAATCCCAATGCAGTAGTCGTTCGTACAGTGTCATCCCAATGGTGATTGAGCACTCTTCCCGAGGGGAGAGGGCTTACGACATCTTCTCGCGCCTCCTCAAGGAGCGCATTATCTGCATCAATGGACCCATCTCCGACGACACTGCTCACGTCGTCGTTGCGCAGCTCCTCTTCCTCGAATCCGAAAACCCTTCCAAACCCATCAACATGTACGTCAATTCCCCTGGTGGTGCCGTCACCGCAGGGCTAGCTATTTATGATACCATGCAGTATATTAGGTCTCCGGTCAGTACGGTATGCATGGGCCAAGCTGCATCCATGGGTTCTCTCCTATTGGCTGCGGGTGCCAGGGGGGAGAGGCGGGCTCTTCCAAATGCATCAATCATGATTCACCAACCTTCTGGTGGTTTTAGTGGCCAGGCAAAGAATATTGCGGTTCACGCCAAGCAGATCGTTCGGGTTTGGGATTCTTTGAATGAGTTGTATGCCAAGCACACGGGCAAGTCGGTTGAGGTCATTCAGGCAAATATGGACGCAGATAACTTCATGAGTCCACAAGAGGCCAAAGAGTTTGGGATCATTGACGAGGTCATTGATCAGAGACCTATCACTTTGGTTTCTGATGCTGTTGGTAATGAAGGGAAAGACAAAGGTTCCAATTAG 723 0.5035 MRGFARSNSLMRKLFHGRNVQSQCSSRSYSVIPMVIEHSSRGERAYDIFSRLLKERIICINGPISDDTAHVVVAQLLFLESENPSKPINMYVNSPGGAVTAGLAIYDTMQYIRSPVSTVCMGQAASMGSLLLAAGARGERRALPNASIMIHQPSGGFSGQAKNIAVHAKQIVRVWDSLNELYAKHTGKSVEVIQANMDADNFMSPQEAKEFGIIDEVIDQRPITLVSDAVGNEGKDKGSN 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01632 240 ProSitePatterns Endopeptidase Clp histidine active site. 140 153 IPR033135 -
Vian5g01632 240 PRINTS Clp protease catalytic subunit P signature 47 62 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vian5g01632 240 PRINTS Clp protease catalytic subunit P signature 196 215 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vian5g01632 240 PRINTS Clp protease catalytic subunit P signature 118 135 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vian5g01632 240 PRINTS Clp protease catalytic subunit P signature 139 158 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vian5g01632 240 PRINTS Clp protease catalytic subunit P signature 87 107 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vian5g01632 240 CDD S14_ClpP_2 47 217 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vian5g01632 240 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 20 224 IPR023562 -
Vian5g01632 240 FunFam ATP-dependent Clp protease proteolytic subunit 30 222 - -
Vian5g01632 240 Pfam Clp protease 41 220 IPR023562 -
Vian5g01632 240 ProSitePatterns Endopeptidase Clp serine active site. 118 129 IPR018215 -
Vian5g01632 240 SUPERFAMILY ClpP/crotonase 39 222 IPR029045 -
Vian5g01632 240 Hamap ATP-dependent Clp protease proteolytic subunit [clpP]. 31 221 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vian5g01632 240 Gene3D - 18 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01632 Vian-Chr5 38876603 38877956 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01632 K01358 - gmx:100782585 391.349