Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01627 ATGTGTGTACCGATTCTTGATTTAGTTCCACAAGGAAAGTTTCCTGCACTTTCTCTTTCTAGAGTTTATTTATTGAAAAATGATTATACAGCACAGAGACGCTTCCTCGCCGAAACTGCCGCAATATCGGTTTCGCTTCCTCACTTTCCGGCAAGGGCCGAAGACACGCTTTCGGAGTGGGAGAGAGTGTACCTCCCTATCGACCCCGGCGTCGTGCTTCTCGACATCGCTTTTGTCCCTGACGACCCCAACCATGGTTTTCTTCTCGGGACGAGGCAAACAATTCTGGAGACGAAGGACGGAGGAAACACTTGGGCTCCGCGTTCGATTCCCTCTGCCGAAGATGAAGATTTCAACTACCGCTTTAATTCTATCAGTTTCAAGGGGAAGGAAGGCTGGATAGTTGGAAAACCTGCGATTCTGTTGTACACTGCTGATGCTGGAGAAAGCTGGGAGAGGATACCTCTCAGCGCTGAACTTCCAGGGGATATGGTGTACATAAAAGCGACTGGTGAGAAGAGTGCAGAGATGGTCACTGACGAAGGTGCAATATACGTTACTGCTAACAGGGGTTACAACTGGAGAGCTGCTGTTCAGGAAACTGTGTCAGCTACTCTTAACAGAACAGTTTCTAGTGGTATTAGTGGTGCAAGCTATTACACTGGGACTTTCAATACTGTCAATCGCTCTCCAGATGGAAGGTATGTTGCAGTCTCAAGTCGGGGCAACTTCTACTTAACCTGGGAGCCTGGTCAGCCGTTCTGGCAGCCACATAATAGAGCAGTTGCCAGAAGAATACAGAACATGGGATGGAGAGCTGATGGTGGTCTTTGGCTTCTTGTTCGTGGAGGTGGTCTTTATCTCAGCAAGGGCACAGGTTTAACTGAAGAATTTGAGGAGGTTCCTGTTCAAAGCCGGGGTTTTGGCATTCTTGATGTCGGATATCGTTCAACGGATGAGGCTTGGGCAGCAGGAGGAAGTGGTATTCTTTTGAGAACTACTAATGGTGGCCAGTCATGGATCCGTGACAAAGCTGCTGACAACATTGCTGCAAATTTATACTCAGTGAAGTTCATTGATGACAAGAAGGGATTTGTGTTGGGGAATGATGGAGTTTTGCTTCGCTACCTTGGATAG 1137 0.4776 MCVPILDLVPQGKFPALSLSRVYLLKNDYTAQRRFLAETAAISVSLPHFPARAEDTLSEWERVYLPIDPGVVLLDIAFVPDDPNHGFLLGTRQTILETKDGGNTWAPRSIPSAEDEDFNYRFNSISFKGKEGWIVGKPAILLYTADAGESWERIPLSAELPGDMVYIKATGEKSAEMVTDEGAIYVTANRGYNWRAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLYLSKGTGLTEEFEEVPVQSRGFGILDVGYRSTDEAWAAGGSGILLRTTNGGQSWIRDKAADNIAANLYSVKFIDDKKGFVLGNDGVLLRYLG 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01627 378 Gene3D - 121 351 IPR015943 GO:0005515
Vian5g01627 378 PIRSF Photosystem_II_Ycf48-like 25 378 IPR016705 -
Vian5g01627 378 Pfam Photosynthesis system II assembly factor YCF48 56 376 IPR028203 -
Vian5g01627 378 SUPERFAMILY Oligoxyloglucan reducing end-specific cellobiohydrolase 59 377 - -
Vian5g01627 378 PANTHER PHOTOSYSTEM II STABILITY/ASSEMBLY FACTOR HCF136, CHLOROPLASTIC 27 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01627 Vian-Chr5 38827225 38832068 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01627 - - vra:106763078 698.353