Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01622 ATGAACATGAAGAACCTGAACATCTCTTTGTGCGTGCTTCTCATAGCTCTTGTTCGCTTAGGGGGAAGTGCACCATCAAGCTTCAACTATGGTGATGCCCTTGACAAGAGTTTGATGTTCTTTGAAGCACAAAGATCTGGTAAGCTACCACTGCAGCAGCGAGTCAAGTGGCGTGGTGATTCTGGCCTCCAAGATGGTTTTCAGCAAGGAGTGGACCTGGTGGGAGGGTACTATGACGCAGGAGATCATGTGAAGTTTGGGTTGCCAATGGCCTACAGTGTCACAATGCTTGCATGGGGAGCCATCGAATTCAGCAAGGAAATTACGAACTTGAACCAAATGGGACATGCATTATGGGCAATTAAATGGGGAACTGATTACTTTGTCAAAGCACACACTCAACCCAATGTTCTTTGGGGACAGGTGGGAGATGGAGTTTCTGATCATTACTGCTGGGAGCGTGCTGAAGACATGACTACATCAAGAGGTGCCTACAAAATTGATGAACAACACCCTGGCTCTGATCTGGCAGGTGAAACTGCAGCTGCATTGGCTGCTGCAGCTTTGGCTTTCAGGCCCTACAATTCTTCTTACTCTGGTCTTCTGCTAGTTCATGCAAAACAGCTCTTCACATTCGCAGATAGGTTCAGAGGTCTCTATGATGACTCTATTTCAAGTGCTCAGCAATTCTATACTTCTTCCGGTTACTCAGATGAATTATTATGGGCTGCCACGTGGCTACACCTGGCAACTGGAGATAAATACTACCTAAAGTATGTGGTGGACAATGGTGTATACATGGGTGGAACTGGCTGGGCAATGAAAGAGTTCTCTTGGGACAACAAATATGCTGGTGTGCAGATCCTCCTAACAAAGATATTACTGGAAGGGAAAGCTGGTCCTTATGCTGATACACTAAAGCAATACCAGGCCAAGGCAGATTATTTTTCGTGTGCCTGCTTGCAAAAGAATGATGGTTACAATGTCCAGAAAACACCAGGTGGCTTACTATATGTACGTGAATGGAACAACATGCAGTATGTTTCTTCTGCTTCATTCCTTTTAGCTGTTTACTCTAATTACCTCTCAGCAACAAAAGCAAATCTCAACTGCCCAGATGGACAAACTCAGCCTCAGGAGCTCCTCAACCTTGTTAAGTCTCAGGCTGATTATATCCTTGGTAATAACCCAGCTGATATGAGCTACTTGGTTGGATATGAAACAAAATATCCTCTTCATGTTCACCACAGGGGCGCTTCCATTGCTTCAATCTTTTCTCTTCACAGTGAGGTTGGCTGCACTCAAGGATTTGAGCTGTGGTATAAGCGTGCTGAGTCAAATCCTAATGTCATCTTTGGTGCCCTCGTGGGTGGTCCAGATAAAAATGATGGCTTCTCTGATGACAGATCTAATTATGAACAAACTGAGCCTACACTTTCAGGTTCTGCTCCTCTTGTGGGCATCTTTGCTAAACTGCAGAGTTTGCATGGTAATGTAGGTGAAGGTTACAACCATAATGAATCACCAATGCCCCAACAAAAAACACAAAGTTACAACCAAGATGAATCACAAGTGCCCCGACAAAAAACACCGAGGGAAAAAACGGCATCTAAAACATCAGAAGGCGCCCCGGTGCAATTTCTTCACTCAATAAGTAGCTCATGGACTGTTGGAGGTGCAACCTATTACCGTCACAGGGTGATAATCAAGAATACTTCTTCGAGGCCAATTTCAGATCTTAAGTTGGTAGTTAAGGACCTCACAGGCTCTTTATGGGGTCTCTCTTCAACAGAAGAAAAGGACACCTATGCACTTCCTCAATGGCAGAAGGTTTTGAATCCTGGCTCTGAGTGTATATTTGTATATGTTCAAGGCGGACCCCAGGCCAAAGTTTCCATTAAGAGCTTCCAATGA 1914 0.4462 MNMKNLNISLCVLLIALVRLGGSAPSSFNYGDALDKSLMFFEAQRSGKLPLQQRVKWRGDSGLQDGFQQGVDLVGGYYDAGDHVKFGLPMAYSVTMLAWGAIEFSKEITNLNQMGHALWAIKWGTDYFVKAHTQPNVLWGQVGDGVSDHYCWERAEDMTTSRGAYKIDEQHPGSDLAGETAAALAAAALAFRPYNSSYSGLLLVHAKQLFTFADRFRGLYDDSISSAQQFYTSSGYSDELLWAATWLHLATGDKYYLKYVVDNGVYMGGTGWAMKEFSWDNKYAGVQILLTKILLEGKAGPYADTLKQYQAKADYFSCACLQKNDGYNVQKTPGGLLYVREWNNMQYVSSASFLLAVYSNYLSATKANLNCPDGQTQPQELLNLVKSQADYILGNNPADMSYLVGYETKYPLHVHHRGASIASIFSLHSEVGCTQGFELWYKRAESNPNVIFGALVGGPDKNDGFSDDRSNYEQTEPTLSGSAPLVGIFAKLQSLHGNVGEGYNHNESPMPQQKTQSYNQDESQVPRQKTPREKTASKTSEGAPVQFLHSISSSWTVGGATYYRHRVIIKNTSSRPISDLKLVVKDLTGSLWGLSSTEEKDTYALPQWQKVLNPGSECIFVYVQGGPQAKVSIKSFQ 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01622 637 MobiDBLite consensus disorder prediction 499 542 - -
Vian5g01622 637 Pfam Carbohydrate binding domain CBM49 546 624 IPR019028 GO:0030246
Vian5g01622 637 SMART CBM49_2 545 625 IPR019028 GO:0030246
Vian5g01622 637 Gene3D - 26 496 IPR012341 GO:0005975
Vian5g01622 637 PANTHER ENDO-1,4-BETA-GLUCANASE 10 495 - -
Vian5g01622 637 Pfam Glycosyl hydrolase family 9 30 488 IPR001701 GO:0004553|GO:0005975
Vian5g01622 637 SUPERFAMILY Six-hairpin glycosidases 27 498 IPR008928 GO:0005975
Vian5g01622 637 MobiDBLite consensus disorder prediction 499 525 - -
Vian5g01622 637 FunFam Endoglucanase 26 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01622 Vian-Chr5 38799828 38804060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01622 28 636 Glycoside Hydrolase AT1G48930 66.831 0.0 813
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01622 K01179 - gmx:100812170 1146.34