Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01617 ATGGCAAAAGAGGGAAGCGACTTTGATGAAGTAAACGACGCGGTGGATGGCACGGGGGAGGAAGAGGAAGAGCAAGCAGCGGAGGAAGAGGACAATGACATGGAAGAAGAGAATGAGTATACTTTCAGGTTCGAAAACGGGATGAATCCTTTGGACTTTGTCGATAACAATGACGATTCTGGCCTTCAACCCTACGAGCGATTCGAGCGTCTTGAACAGCAAGCTCTTGCCGATAAAAAACGAAAAGCAACTGAACAATGCCACAGTGAAGGGCCTCCTTCTAAGATGGCTAGGGAAAGTGATATTTCCGGGTCAAAGATAGCTGAGATAATGGAAGCAATGAATTATCATGGTGTGCGCAAGAGATCAAGAAAGCCTAAAAAGAGAGGCAGGCGAAAAGGATCGAAGAATAAAATGGACCCTAAGCTAGAACGGATGCTGGGTGATGCCAATCTTCACTATTCACGTAAGCATTATGACGAGGCTAAAGATGTGCTGCTTGAAGTTATTAAGTTGGCACCGAATGTGGCTGATTCTTATCACACCCTTGGACTTGTCTGTAATTCACTCCAGGATGATAAAGGAGCAATGACTTTTTACCTAATTGCTGCTCTTTTGAATCCTACTAAATATTCATCTCTTTGGGAAATGATTTTTAGTTGGTCCATAAAACAAGGTCATAAAGATCAAGCACGATATTGTCTTTTAAAAGCAATAACAGCAGATCCCAAAAATATTACTCTTAGACGTGATCTTGTAGGGCTTTATGTTGAACTTGGAGACTATCAAAAAGCTGCTGTTACATATGAGCAAGTACATCAACTCTGTTATGAGAATGTTGAACCACTGAAAGAAGCAGCTAAGTTGTACAAAAAATGTGGTCAAGTTGAGCATGCTGTTTGTATTCTTGAAGACTATCTTAAGAGTCAACTGGACGGAGCAAATGCGAGTGTAGTTGATCTGCTGTGTACCATATTGATGGAAACTAAGGCACATGACAGAGCTTTGCAGTATATTAAACATGCCCAAGCTGCAAATGCATGGGAAGAATTACCGTTGAATTTGAAAATTAAGGCTGGAATTTGCCATGCTCATCTTGGAAAAATGGATATGGCTCAGGTTAGGTTAATTGATATTCTTTCAAAACTTAACTTTATGCATGTTGACTTGGTTATTGAGGTTGCTGATTCATTAATGGGTCTTGAACATTATAACCCTGCATTGAATTACTATTTGATGTTGGAAGGAAATATTGGAAACGAAAATGGTCCTCTATATCTGAAACTTGCTAAATGTTACAGGTCCTTGAAAGAAATTTTTTCTTTGATATTTTATTTTGTTTCAGCCCTTGAAATACTACAAGATGACGTTGATGCACGGATAACTCTAGCTTCCCTTCTGCTTGAAGAGGGAAAAGAAGATGAAGCAATTTCCTTGTTGTCTCCTCCAAACGATTCTGACTCTGGTGATGCAAATCCTGAAAAGTCAAATAGATGGTGGGTTAATGGAAGGATAAAACTGAAGCTCTGCAACATTTATAGGAATAGAGGGACACTTGGTGATTTTGTGGATACAATTTTCCCTTTGGTTCGTGAATCATTAGATGTTTCAACTCTTCGACAGAAGGGTAAATCAAAAAGGCGACTCACCAAAAGAGATCTGGTCGAAAGGGTTAGGATGGTAGATGGTCCAGAAAATGATAATGTATTTCGAGGATTCAGGCCAGTAGCTGCACCATCTGACCGGTTGAAAGCTTCCAGGGCAAAAAAGTTGCTGCAGAAGATGGCAATTGAAAAGGAGAAAAGAAAAGCTGAGGCACTGGCCTCCGGAATTGATTGGCTAAGTGATGATTCAGATGATGAACCTCAGATAGAAAACAGAGAACCTCCCTTGTGCATTCTTCGGAAATATGAAGAACATCACCAGCTAATAATCGATTTGTGCAAGGCATTAGCATCCTTGCAAAGGTATTGGGAAGCACTGGAGATTATTAATCTCTCTCTAAGATTGGCTGGTACATCTCTGTCTACTGACAAGAAAGAGGAACTTCGATCCCTTGGAGCTCAAATGGCATACAGCACCACGGATCCTAAACATGGGTTTGATTGTGTAAAATACATTGTTCAGCAACATCCACACAGTGTTGCAGCTTGGAATTGCTACTACAAGGTTATCTCAAGATTGGAAAACCGAGATACAAGACATTATAAATTTGTACGTGTTATACAAGGAAAGTTTGTGGACTGTGTGCCTCCTATTCTAATTTCTGGCCATCAGTTTACCATATTTAGCCATCATCAAGATGCAGCAAGGAAATACCTTGAAGCTTACAAACTATTGCCAGAGAATCCCTTGGTTAATCTCTGCGTTGGAACAGCCTTGATCAACTTAGCATTGGGTTTCAGACTTCAGAACAAGCATCAATGTCTTGTACAAGGTTTAGCATTCCTCTACAACAACTTGAGAATCTGCGAGAACAGCCAGGAATCCTTATACAACATAGCTCGGGCCTATCATCATGTTGGCCTTGTAACTCTGGCGGCTGTTTATTATGAGAAAGTGATTGGTATTCGCGAGAAAGACTGTCCAATTCCAAAACTTCCCAATGAAAATCCAGATGTCATCGAAAATCATAAACCTGGTTACTGCGACCTTCGCAGAGAGGCAGCTTACAATTTACATTTAATCTACAAAAAAAGTGGCGCTCTTGATCTTGCTAGGCAAGTTCTCAAAGATCACTGTACCTTGTGA 2751 0.4046 MAKEGSDFDEVNDAVDGTGEEEEEQAAEEEDNDMEEENEYTFRFENGMNPLDFVDNNDDSGLQPYERFERLEQQALADKKRKATEQCHSEGPPSKMARESDISGSKIAEIMEAMNYHGVRKRSRKPKKRGRRKGSKNKMDPKLERMLGDANLHYSRKHYDEAKDVLLEVIKLAPNVADSYHTLGLVCNSLQDDKGAMTFYLIAALLNPTKYSSLWEMIFSWSIKQGHKDQARYCLLKAITADPKNITLRRDLVGLYVELGDYQKAAVTYEQVHQLCYENVEPLKEAAKLYKKCGQVEHAVCILEDYLKSQLDGANASVVDLLCTILMETKAHDRALQYIKHAQAANAWEELPLNLKIKAGICHAHLGKMDMAQVRLIDILSKLNFMHVDLVIEVADSLMGLEHYNPALNYYLMLEGNIGNENGPLYLKLAKCYRSLKEIFSLIFYFVSALEILQDDVDARITLASLLLEEGKEDEAISLLSPPNDSDSGDANPEKSNRWWVNGRIKLKLCNIYRNRGTLGDFVDTIFPLVRESLDVSTLRQKGKSKRRLTKRDLVERVRMVDGPENDNVFRGFRPVAAPSDRLKASRAKKLLQKMAIEKEKRKAEALASGIDWLSDDSDDEPQIENREPPLCILRKYEEHHQLIIDLCKALASLQRYWEALEIINLSLRLAGTSLSTDKKEELRSLGAQMAYSTTDPKHGFDCVKYIVQQHPHSVAAWNCYYKVISRLENRDTRHYKFVRVIQGKFVDCVPPILISGHQFTIFSHHQDAARKYLEAYKLLPENPLVNLCVGTALINLALGFRLQNKHQCLVQGLAFLYNNLRICENSQESLYNIARAYHHVGLVTLAAVYYEKVIGIREKDCPIPKLPNENPDVIENHKPGYCDLRREAAYNLHLIYKKSGALDLARQVLKDHCTL 916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01617 916 MobiDBLite consensus disorder prediction 1 101 - -
Vian5g01617 916 Pfam Tetratricopeptide repeat 829 861 IPR019734 GO:0005515
Vian5g01617 916 SUPERFAMILY TPR-like 150 479 IPR011990 GO:0005515
Vian5g01617 916 MobiDBLite consensus disorder prediction 116 141 - -
Vian5g01617 916 Coils Coil 19 40 - -
Vian5g01617 916 PANTHER TRANSCRIPTION INITIATION FACTOR IIIC TFIIIC , POLYPEPTIDE 3-RELATED 19 916 IPR039340 GO:0006383
Vian5g01617 916 SUPERFAMILY TPR-like 757 911 IPR011990 GO:0005515
Vian5g01617 916 SMART tpr_5 143 176 IPR019734 GO:0005515
Vian5g01617 916 SMART tpr_5 423 456 IPR019734 GO:0005515
Vian5g01617 916 SMART tpr_5 246 279 IPR019734 GO:0005515
Vian5g01617 916 SMART tpr_5 828 861 IPR019734 GO:0005515
Vian5g01617 916 SMART tpr_5 177 210 IPR019734 GO:0005515
Vian5g01617 916 SMART tpr_5 641 674 IPR019734 GO:0005515
Vian5g01617 916 MobiDBLite consensus disorder prediction 11 38 - -
Vian5g01617 916 FunFam General transcription factor 3C polypeptide 3 546 915 - -
Vian5g01617 916 Gene3D Tetratricopeptide repeat domain 578 914 IPR011990 GO:0005515
Vian5g01617 916 Gene3D Tetratricopeptide repeat domain 358 511 IPR011990 GO:0005515
Vian5g01617 916 MobiDBLite consensus disorder prediction 120 136 - -
Vian5g01617 916 MobiDBLite consensus disorder prediction 62 95 - -
Vian5g01617 916 Gene3D Tetratricopeptide repeat domain 21 351 IPR011990 GO:0005515
Vian5g01617 916 SUPERFAMILY TPR-like 390 721 IPR011990 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01617 K15201 - gmx:100804533 1445.64