Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01616 ATGAAAAGAGGATTTGGTGTAAGAGCTTTGCTCATTTCCTTTCGAAACTGTAACCCTCTTCCGCCGCCGCTACTACCACTGTCACTCCCCTTTCGCGCCGCTAGATCTCTTCATTCGCCGTCGTCTTCCGTCGCAGCCATGCCCGGAGCTGATACTCAGCATGTGGAGTGGCCGGCGAAGCGCGTGAGGGACACTTTCATGGGTTTCTTCGAAGGCAAGAATCACGTCAACTGGAAGTCCAGCCCCGTCGTTCCCTTCAATGACCCCACTCTTCTCTTCGCCAACGCTGGTATGAACCAGTTTAAGCCAATTTTTTTGGGTACCGCGGATCCCAACACTGCCTTGAGTAAACTCTCTCGTGCTTGCAACACACAAAAGTGCATTCGAGCTGGTGGTAAACACAATGATCTTGATGATGTAGGGAAGGACACCTACCACCACACCTTCTTTGAGATGTTGGGAAATTGGTCCTTCGGGGATTACTTTAAAGTAGAAGCCATCAGCTGGGCGTGGGAGCTTCTAACCGAAGTTTACAAGTTACCTTCAGATCGCTTGTATGCCACATATTTTGGTGGTGATGACAAGGCTGGTCTTGCCCCTGATTTTGAGGCTAGAGATATATGGCTGAAGTTTTTGCCTCCTGGACGTGTGCTTCCTTTTGGATGCAAAGACAATTTCTGGGAAATGGGTGATACTGGTCCTTGTGGACCTTGCACTGAAATACATTTTGACAGAATTGGTAACCGTGATGCTGCATCATTGGTTAATTATGATGATCCTACTTGCATTGAGATATGGAACCTTGTCTTTATTCAGTTCAATAGGGAGGCTGATGGCTCTCTTAAACCGCTTCCAGCAAAGCATGTTGATACGGGCTTGGGTTTTGAACGATTGACCTCTGTACTACAAAACAAAATGAGCAATTATGACACTGACATCTTCATGCCAATCTTTGATGTTATTCAGAAGGCAACTGGTGCCAGACCATATTCTGGTAAAGTTGGAGCAGATGATGTAGATAAAATTGACATGGCATACAGGGTTGTTGCAGATCACATCAGAACTCTTTCATTTGCCATTGCTGACGGGTCTCGTCCTGGTAATGATGGTCGTGAGTATGTTCTAAGACGAATACTTCGTCGAGCTGTGCGGTATGGACGTGAAGTGCTAAAAGCTAAAGAGGGATTTTTCAGTGGGTTTGTAAGTGTGGTGGTGAATTTGATGGGTGATGTTTTCCCTGAGCTAAAACAACAGGAAACACACATTCGGAATGTAATTGAAGAGGAGGAGGAAAGTTTTGGAAGAACCTTAATTAAGGGTATTGAGAAATTTGAGACAGCTGTTCAACATGTTCAGGGAAAGACACTGAGTGGGGAGGCAAGTAGAACCTCATTTGTCTTGTGGGATACATATGGATTCCCATTAGATCTCACTCAGCTGATGGCTGAAGAAAAGGGATTAGTTGTTGATGTTAAAGGTTTTGATAGGGCAATGGAGGCTGCAAGAGAGAGATCCAGAAGTGCTCAAACAAAGCAAGCTGGTGGGGCCATTGTCATGGATGCTGATGCTACCTCTGCATTGCACAAAAGGGGCATATCCCCAACAGATGATAGCTTCAAATATGCTTGGTTCAAGGACCATGAGAGTGTGGTACAAGCAATATATACTGGTTCTGAGTTTGTTGATACCGTTAATACTGGTGATGATGTTGGTTTAGTTCTGGAATCTACAAGCTTCTATGCTGAGCAAGGTGGTCAGATTTTTGATACTGGATCACTTGAGGGTACAATTGGTTCATTTGAAGTACATAATACTCAAGTTTACGGAGGTTTTATTCTTCACATTGGTAATGGGACCGGTGTCTCTGTTGGTGACAGAGTAGTTGACTATGGAAGACGTGCCATCATAGCCCCTAACCATACCTGCACGCACATGTTAAACTTTGCTCTTAGGGAAGTACTTGGCAATCATGTTGACCAGAAAGGATCCATTGTTCTACCTGAAAAATTGAGATTCGACTTTTCTCATGGCAAGCCTGTTGACGCCGACAATTTAAGGAGAATTGAGGCAATTGTTAATGAGCAAATTAAAGCTGAATTGGATGTAAGTGCAAAGGAAGCAACTCTTGCAGATGCCAAGCGTATCAATGGTTTACGAGCTGTATTTGGTGAAGTCTATCCCGATCCTGTTAGAGTTGTGTCAATTGGACAAAAAGTTGAGGATCTTCTTGCTGACCCTGACAATGAAAAATGGTTATCTATTTCATCAGAATTATGTGGAGGTGAATATTGTAGCAATGCTTTCTTTGAAGCTGTCACAACTGATCGTGCTTATGATGCAATGAAAGTGGCAGATGAATTGGAGCAGCAAGTAGATGAAGCAGCTAAGTTAGATGGAAGTTTGTTGGAAGAGCCTTGGAGGAAGATGGGAGTTTGTGCTGCTATAATGAAAGTTTCATCATTGAAAAACAATGTTGAAACTTTATCAATTCCTGCTGCCAAGAAAGCTGACATCAAGACAAAGATAGCCCGACTTCAGAAGCAGATTGCTGAGGAAAACAAGCGTAAAGCTGTAAATATTACAGCTGAGAAAGCTGAGCTTGCTGCTTCTAACGGGAAAACTTTTTGCATATCTCGTGTTAATGTTGGTCTGGATGTGGCTGCAGTTCGTGAGGCTGTTACAAAAGTGATGGACCAAAAGGGCTTATCTGTGATGGTTTTTAGCACGGATGAATCTACAAACAAGGCTGTAATTTGTGCTGGGGTGCCAGAGAAAGGAGATAAAGGTAAGCTGGATGTGGCAGAGTGGCTGAGTAATGCGTTGGGGCCTCTAAAAGGGAGATGTGGTAAAGGAAAAGGTGGTCTTGCAACGGGTCAGGGTACAGATGCAGCACACGTTAACGAGGCAATGGATCTTGCAGAAAAATTTGCATCAATGAAGTTGAGTTAA 2949 0.4385 MKRGFGVRALLISFRNCNPLPPPLLPLSLPFRAARSLHSPSSSVAAMPGADTQHVEWPAKRVRDTFMGFFEGKNHVNWKSSPVVPFNDPTLLFANAGMNQFKPIFLGTADPNTALSKLSRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKVEAISWAWELLTEVYKLPSDRLYATYFGGDDKAGLAPDFEARDIWLKFLPPGRVLPFGCKDNFWEMGDTGPCGPCTEIHFDRIGNRDAASLVNYDDPTCIEIWNLVFIQFNREADGSLKPLPAKHVDTGLGFERLTSVLQNKMSNYDTDIFMPIFDVIQKATGARPYSGKVGADDVDKIDMAYRVVADHIRTLSFAIADGSRPGNDGREYVLRRILRRAVRYGREVLKAKEGFFSGFVSVVVNLMGDVFPELKQQETHIRNVIEEEEESFGRTLIKGIEKFETAVQHVQGKTLSGEASRTSFVLWDTYGFPLDLTQLMAEEKGLVVDVKGFDRAMEAARERSRSAQTKQAGGAIVMDADATSALHKRGISPTDDSFKYAWFKDHESVVQAIYTGSEFVDTVNTGDDVGLVLESTSFYAEQGGQIFDTGSLEGTIGSFEVHNTQVYGGFILHIGNGTGVSVGDRVVDYGRRAIIAPNHTCTHMLNFALREVLGNHVDQKGSIVLPEKLRFDFSHGKPVDADNLRRIEAIVNEQIKAELDVSAKEATLADAKRINGLRAVFGEVYPDPVRVVSIGQKVEDLLADPDNEKWLSISSELCGGEYCSNAFFEAVTTDRAYDAMKVADELEQQVDEAAKLDGSLLEEPWRKMGVCAAIMKVSSLKNNVETLSIPAAKKADIKTKIARLQKQIAEENKRKAVNITAEKAELAASNGKTFCISRVNVGLDVAAVREAVTKVMDQKGLSVMVFSTDESTNKAVICAGVPEKGDKGKLDVAEWLSNALGPLKGRCGKGKGGLATGQGTDAAHVNEAMDLAEKFASMKLS 982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01616 982 Gene3D - 869 977 - -
Vian5g01616 982 SUPERFAMILY ThrRS/AlaRS common domain 628 766 IPR018163 GO:0000166
Vian5g01616 982 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 310 513 IPR018162 GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419
Vian5g01616 982 FunFam Alanine--tRNA ligase, cytoplasmic 629 772 - -
Vian5g01616 982 FunFam Alanine--tRNA ligase 534 629 - -
Vian5g01616 982 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 57 766 IPR018165 GO:0003676|GO:0004813|GO:0005524|GO:0006419
Vian5g01616 982 PANTHER ALANYL-TRNA SYNTHETASE 52 979 - -
Vian5g01616 982 CDD AlaRS_core 59 305 - -
Vian5g01616 982 SUPERFAMILY Translation proteins 558 627 IPR009000 -
Vian5g01616 982 Pfam DHHA1 domain 840 976 IPR003156 GO:0003676
Vian5g01616 982 Coils Coil 835 855 - -
Vian5g01616 982 Pfam tRNA synthetases class II (A) 62 627 IPR018164 GO:0000166|GO:0004813|GO:0005524|GO:0006419
Vian5g01616 982 Gene3D - 542 629 - -
Vian5g01616 982 Gene3D - 630 722 - -
Vian5g01616 982 PRINTS Alanyl-tRNA synthetase signature 263 274 IPR002318 GO:0000166|GO:0005737
Vian5g01616 982 PRINTS Alanyl-tRNA synthetase signature 290 303 IPR002318 GO:0000166|GO:0005737
Vian5g01616 982 PRINTS Alanyl-tRNA synthetase signature 371 384 IPR002318 GO:0000166|GO:0005737
Vian5g01616 982 PRINTS Alanyl-tRNA synthetase signature 135 146 IPR002318 GO:0000166|GO:0005737
Vian5g01616 982 PRINTS Alanyl-tRNA synthetase signature 347 363 IPR002318 GO:0000166|GO:0005737
Vian5g01616 982 NCBIfam alanine--tRNA ligase 62 959 IPR002318 GO:0000166|GO:0005737
Vian5g01616 982 SUPERFAMILY Class II aaRS and biotin synthetases 59 309 IPR045864 -
Vian5g01616 982 FunFam Alanine--tRNA ligase 870 977 - -
Vian5g01616 982 FunFam Alanine--tRNA ligase, cytoplasmic 56 306 - -
Vian5g01616 982 Hamap Alanine--tRNA ligase [alaS]. 57 981 IPR023033 GO:0004813
Vian5g01616 982 Gene3D Bira Bifunctional Protein; Domain 2 58 306 IPR045864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01616 Vian-Chr5 38699698 38718494 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01616 K01872 - gmx:100788271 1650.95