Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01609 ATGATTCTACAACACGCTTCTTCCATTTCACACTTCTCTTCACTCTCTCCTTCTCTCTGTCCTTGTAACGCAGCATTTCCGTTCTCCAGAAGAACCAGAAAGCGGTTATTCGTAAATTTCGGTTCTCGCAAATTCCGCAGAAAACGCACCGTTCGCCTCTGCGCCCTTCCTTCCGACGCTTCCAACCCGAACTGGAATTCAGAATTCGCAAATTCCGCGCGGAGAACCGCCGCAACGTTCGTTCTCAAACGAATTTCCAATGAACTCGACGAAGACAACAACATCAGCAACGATGTTGATGAAACCGAGCTGCACGATTTAGCTACGCCGTCCTCGTCGTCGCCGTCGGCGGCGGTTCAATTAGGTTCAAACTTCACCGGTTTCCGCGAGGATCCTATTGTGGATAAGCTGAGGACGCAGCTAGGGGTTATTCACCCGATTCCGTCGCCTCCGATTAATCGCAACGTGGTTGGCTTGTTTGTGTTCTTCTTCTTCGTCGGCGTGGTGTTCGATAAACTGTGGACTTCGCGGCGGCGGAGCAAGAGCGGCGGCGAGGATGGGCTGCGCGGCGTGTGGCCGCAGGTGCCGACGAGCTTTTCGCTGTTCCTGGAGAAGGATTTGCAGAGGAAGGAGTCCGTGGAGTGGGTGAACATGGTGCTGGGGAAGCTGTGGAAGGTGTATAGAGGTGGAATTGAGAACTGGATTATAGGGTTGCTTCAGCCTGTGATTGACAATTTGAAGAAGCCTGATTACGTTGAGAGGGTTGAGATTAAGCAGTTCTCGTTAGGAGATGAACCCTTGTCTGTTAGGAATGTTGAGCGCAGGACTTCTCGCAGGGTCAACGACTTGCAGTACCAGATAGGGCTTAGGTACACAGGTGGTGCTCGCATGCTGTTGATGCTTTCTCTGAAATTTGGCATTATTCCAATTGTCGTACCTGTTGGTGTTCGAGATTTTGACATCGATGGCGAACTTTGGGTAAAATTAAGACTAATACCAACGGAACCATGGGTGGGAGCTGTTTCATGGGCTTTTGTTTCACTTCCCAAGATCAAGTTTGAACTATCTCCATTCCGTCTGTTCAATTTAATGGATAGAAAGAAACTCTGGTTTTTGACTAAACTTCTCACTGAAGATTTACCCAAACTATTTGTACGCCCTAAGAAAATAGTTTTAGATTTCCAAAAAGGAAAAGCTGTGGGTCCAGTTGCTAATGATGTTAAATCTGGAGAAATGCAAGGAAATAAAGATTCTGTGGGTGAACTATCTGTTACTCTGGTGGATGCTCGAAAACTTTCTTATATTTTCTATGGCAAGACAGATCCATATGTTGTTCTTGGCCTTGGTGATCAAGTTATACGCAGCAAAAAGAACAGTCAAACTACCGTAATTGGACCCCCAGGAATGCCAATTTGGAATCAGGATTTTCATATGCTCGTTTCCAACCCTAGAAAACAGAAGTTATTCATTCAAGTAAAGGACGCTCTAGGATTTGCAGATTTGACTATCGGTACAGGAGAGGTTGATTTGGGATCTCTTAAAGACACTGTACCAACAGACAAAATTGTTGTTTTACAAGGAGGTTGGGGATTTTTAGGAAAGCGCTCTTGTGGCGAGATATTACTTCGGCTAACATATAAAGCATATGTGGAGGATGAGGAAGATGATAAAACTGAGATGGGTTCCATTTATACTGATGTTTCTGATGACGAGTTGTCTGATTCGGAAGCAAATGTCACTGACGAGAGGGAGGAAAGAAATTCTTTGTACGAAACAGATAAAGAGTCATTTATGGATGTTTTGGCAGCATTAATTGTGAGCGAAGAATTTCAGGGGATAGTAGCATCTGAAACAGGGTTTGGCAAAGTTTTGGACAATGGCTCAAATGCTGCGTCTAAAGTGTCAAAGTCTCCGGTTCCCAATGCTGAACCAACTCCTTCTAGTTCTGATTATTCTGAAGGTTCTGGAGGGTCAGCCTTACTTTGGCTTGCTGTGATTACTAGCATATCACTACTAATTTCTCTCAATGTTGGGGGATCCAATCTCTTCAATCCTTAA 2058 0.4509 MILQHASSISHFSSLSPSLCPCNAAFPFSRRTRKRLFVNFGSRKFRRKRTVRLCALPSDASNPNWNSEFANSARRTAATFVLKRISNELDEDNNISNDVDETELHDLATPSSSSPSAAVQLGSNFTGFREDPIVDKLRTQLGVIHPIPSPPINRNVVGLFVFFFFVGVVFDKLWTSRRRSKSGGEDGLRGVWPQVPTSFSLFLEKDLQRKESVEWVNMVLGKLWKVYRGGIENWIIGLLQPVIDNLKKPDYVERVEIKQFSLGDEPLSVRNVERRTSRRVNDLQYQIGLRYTGGARMLLMLSLKFGIIPIVVPVGVRDFDIDGELWVKLRLIPTEPWVGAVSWAFVSLPKIKFELSPFRLFNLMDRKKLWFLTKLLTEDLPKLFVRPKKIVLDFQKGKAVGPVANDVKSGEMQGNKDSVGELSVTLVDARKLSYIFYGKTDPYVVLGLGDQVIRSKKNSQTTVIGPPGMPIWNQDFHMLVSNPRKQKLFIQVKDALGFADLTIGTGEVDLGSLKDTVPTDKIVVLQGGWGFLGKRSCGEILLRLTYKAYVEDEEDDKTEMGSIYTDVSDDELSDSEANVTDEREERNSLYETDKESFMDVLAALIVSEEFQGIVASETGFGKVLDNGSNAASKVSKSPVPNAEPTPSSSDYSEGSGGSALLWLAVITSISLLISLNVGGSNLFNP 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01609 685 CDD SMP_SF 231 393 - -
Vian5g01609 685 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 209 395 IPR031468 GO:0008289
Vian5g01609 685 MobiDBLite consensus disorder prediction 557 590 - -
Vian5g01609 685 ProSiteProfiles C2 domain profile. 408 523 IPR000008 -
Vian5g01609 685 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 44 685 - -
Vian5g01609 685 CDD C2 422 516 - -
Vian5g01609 685 MobiDBLite consensus disorder prediction 631 653 - -
Vian5g01609 685 SMART C2_3c 421 522 IPR000008 -
Vian5g01609 685 Pfam C2 domain 420 518 IPR000008 -
Vian5g01609 685 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 420 548 IPR035892 -
Vian5g01609 685 Gene3D C2 domain 400 549 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01609 Vian-Chr5 38639410 38646182 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01609 - - gmx:100817508 1088.17