Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01600 ATGCCGAAGCCTTGTGACTTGCAAATCAACATCGATGGTCAGCAGATATTTCTATTGAAAGAGAAGGTTATTTCAAAATACTGTGGAGGGTTGAAGAAAATCTTGAATCACAGAAAGAGAAGAGGTCATGTGAAGCAGGAGTTGGGGATTAGGATCAATGATTTTCCTGGAGGACCAGAAGGGTTTGAGCTAGTTTCAATGTTCTGTTACAATAATGGAAAAATACAAATCACTGAAGCTAATGTGTGTCTCCTACACTGTTGTGCTGTTTATCTTGGAATGACTGAGGAGGTACTCAGCAACAATCTGTTGCAGCAAACAGAAGCTTTTCTCCAGGGAATCTTCAACTGGAAATGGAGTGAAACACTTGTGATTCTCAAGAGTTGCGAGCGGTTTTATGCATATGCAGATGGTTATGGTCTTTTGGAGAAGATCATCAGTGTCTTAGCCAAGTTTGTGCAGAATTCAGATTCAAACCTCCTCATGTCCTCACCTTCAGCATCATCATCATCTTCTTCACCAGAAACCAATTCTGCTAAAAGATTCTCTTTTTCATCCAAGAAAACTACCCCAGAAAAAATAAAGTCAACTTTGTCACGCAAGGCATGGTGGTTTGATGATTTGGCAACTTTACCACCAAATATCATCGAGAAACTTGTCCAGGCTATAGGAGCATACAAAGCTGATAACAAAGATTTAGTCCTCACAAGATTTCTGCTGCATTATCTGAAACTAGCTACTCAAACCAGAGTAGTTAATAGCAGCAACAACAGTGCATATGCTGCTCTTGCAGAAACTGCAACTTATGGAGTCATATCAGTTGGAAAAGAGATATTTTCTTGCAGAGGCCTTTTTTGGGTTTTAAGGATTGTATCAAAGCTTGGGTTGGGTAGAGATGTTAGAACAGAATTGGAGAAACTGATTGGTGGGATGATTGAGCAAGCTACACTGGATGATCTTCTGGTTTCTGGGCATGACATGGGAGTTTATTATGATATTAATTTGGTGATAAGATTGGTTAAGGTATTTGTTGATATGAATGGCTCTGATGATGGAATGTGTTTACAGAAACTGAAAAGGGTTGGTCGATTAATTGACAAGTATTTGAGAGAGATATCCCCTGATCAGAACCTCAAGATCTCTAAGTTTCTTGGAGTAGCAGAATGCTTGCCAGACTCAGCAAGGGATTGTTATGATGGAGTCTATAAAGCCATTGACATCTATCTTCAGTCTCATCCAATTATCACATTTGAGGAAAGATCGAGACTGTGTAGATGTCTTAATTACACCAAGCTCACCTTTGAAGCAAGTAAAGATCTGGCCAAGAACCCCAGAATACCTCCCAGGGTTGCAATGCAGGCTCTTATTTCTCAACAATCAAAAGTTCCAACAATTGACTATGTAACTGAGAGTCCAAGAGTGAAACCTTCCCAATTAGTTTTGTACAATGAAAAAACCAGAAACAGCTTCACCAAAGAGAAGAAAGAAATGGAACTCAACATAGACAAGATGCAATGGGGAGTAATAGAACTGGCGAAATTACATAAGGAAATGAACGGTCACGTATCGAAGTTGATCTTGCTTGATCCTCCTCGTTCTTCATCCTCACCAAGATTTTGTTGA 1623 0.3956 MPKPCDLQINIDGQQIFLLKEKVISKYCGGLKKILNHRKRRGHVKQELGIRINDFPGGPEGFELVSMFCYNNGKIQITEANVCLLHCCAVYLGMTEEVLSNNLLQQTEAFLQGIFNWKWSETLVILKSCERFYAYADGYGLLEKIISVLAKFVQNSDSNLLMSSPSASSSSSSPETNSAKRFSFSSKKTTPEKIKSTLSRKAWWFDDLATLPPNIIEKLVQAIGAYKADNKDLVLTRFLLHYLKLATQTRVVNSSNNSAYAALAETATYGVISVGKEIFSCRGLFWVLRIVSKLGLGRDVRTELEKLIGGMIEQATLDDLLVSGHDMGVYYDINLVIRLVKVFVDMNGSDDGMCLQKLKRVGRLIDKYLREISPDQNLKISKFLGVAECLPDSARDCYDGVYKAIDIYLQSHPIITFEERSRLCRCLNYTKLTFEASKDLAKNPRIPPRVAMQALISQQSKVPTIDYVTESPRVKPSQLVLYNEKTRNSFTKEKKEMELNIDKMQWGVIELAKLHKEMNGHVSKLILLDPPRSSSSPRFC 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01600 540 PANTHER OS12G0117600 PROTEIN 4 513 IPR043454 -
Vian5g01600 540 MobiDBLite consensus disorder prediction 164 184 - -
Vian5g01600 540 ProSiteProfiles NPH3 domain profile. 202 461 IPR027356 -
Vian5g01600 540 SUPERFAMILY POZ domain 3 96 IPR011333 -
Vian5g01600 540 Pfam NPH3 family 203 437 IPR027356 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01600 Vian-Chr5 38534806 38538351 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01600 6 464 EF-hand Containing Proteins AT3G44820 26.772 7.97e-49 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01600 - - gmx:100808259 847.81