Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01592 ATGGATTATGAGGCTGATGGTTTTGGTGCCAATGGCGAGGGAGAGAGCAAGAGAGTGGGTGAAGGCGTTTCTGAGGAGATTGTGGTGGGGTCTGACAGTTTGAAGAGTTTAGATGTAGAGGAGGATTTTCAGGAGGCAATGGAGCCACGGGAGCAGGTTCGTGATCAAGGATCGGAACTCCGTCCGGAGGAGGCCGTAGTTGATAAACTGGATGATACCAACGCTGGTAGTTCATTGACTTCAGCTTTGGTGGATGAACAAAGTTCAGATGTCGTTCAGGAGCCTGATTCCTCTAAGGAGGCCATTGGGGCTGATTCTGAGTATGGGAAGCTGGGTGAAACTGATTTAATTGCTAATCAGGATTCGAAATGGGATGGGCCGGGAAATGATACTGTTCATCTGGATGGTGTTGATTCTGGAGTGTCTGGAGATGATGATTTTCTTTATGGTTTTAATGGTGTGGAGGAGGATAATTTGGAGCATAATGATGAGATAGGTGGAAAGGAAGAGTCTGGGTTAAATTCTGACGTAGAGGTGTCAGATAAGGAAAATGGTTTTGTGGTGGATGAAAACTCTGGTTTGACGAGTGATAAGGCTGAATTTGATGATACTGAATTCAAAACTCCTAGAGAAAATGGTGGTACAACGTTGGATGATGTAAACACAGACAAGGAGGACGGTTTGGACACTGAAGTTATTATCGAATCTGAATCCGGTGTGGTGATTCCAGCTGAAGGTACTGACGATGGGGATTTGAAGGAGTGTGACGCAGATCCTAAAATTGGAGATGGCAATACAGAGGTGAAGTTAAATGATTCAGCTGATTCTTCGGGTGATATTCACGATGATACATATGAAGAAGTACATGCCACTTCAGCTGACACGACTATAGAACAACAGGATGAAGTTACTAGGGATGTGAAGGATGCTACTCTGGGCACTGATATAAGCCATGAGGATAAAAATGAAGAAGAAACGAGTGCCCCTAGCATTCAGAATGCTGAATTAACTGGTTATGGAAATGGTGATGCCGAAGATGAAATCTCATCCTCTTTGGAAATTCCCTCAACTAAGGAGACATTGCCTATTCAGGAGGGTAGTGCGGCTGATCCAAACGACGGAAGTAATAAGGATGATCAAGCTCAGATTTCAGATGAAAATCATAGAGATGATGAGAACTCTTGTGTGGTTGAAGAGCCTGAAAGGATACATGAGAAGATTATTAAAGAGATAGGAACCACACAAGAGACTGGAGAGCAACCTGTTCAACCTTCCACAGTTGTTTCTTCGACCGAAAGGTCTGCTGATGCTGGGCCTCTTCCTGTTCATCCTTCATCTGAAAATTCTGTGGGTGCTGGACCCACTCCTGTTCGTCCCGCCGGCCTTGGTCGTGCAGCTCCATTGCTGGAACCTGCATCTCGGGTGGTGCAGCAGCCTCGTGCTAATGGTACTGTGTCTAACGCTCAAGCCCAGCAAATGGAGGACTCCTCGAGTGGGGAGGCTGAGGAGTACGACGAGACACGGGAGAAACTTCAGATGATCAGGGTGAAGTTTTTACGGTTGGCTCATAGGCTTGGGCAAACTCCCCATAATGTTGTTGTAGCTCAAGTTTTATATAGATTAGGACTAGCTGAGCAACTAAGAGGAAGGAATGGGGGCCGTGTTGGTGCTTTTAGCTTTGACCGTGCAAGTGCAATGGCGGAGCAGCTTGAAGCTGCAGGTCAGGAGCCACTTGATTTCTCTTGTACAATAATGGTCCTTGGAAAGACTGGAGTTGGTAAAAGTGCTACCATCAATTCTATTTTTGACGAGGTTAAGTTTAATACCAGTGCTTTTAGTATGGGAACCAAGAAGGTTCAGGATGTCGTGGGAACAGTCCAGGGTATTAAGGTACGGGTCATTGATACACCAGGACTTCTACCTTCCTGGTCAGACCAGCGAAGCAACGAGAAGATCCTCCTCTCTGTTAAGAACTTCATAAAGAAAACTCCTCCTGATATTGTGTTGTATCTTGATAGGTTAGATATGCAAAGCAGGGATTTTAGTGACATGCCACTCTTACGCACAATTACGGAAATTTTTGGGCCATCCATTTGGTTCAATGCCATTGTGGTTCTGACTCATGCAGCATCTGCCCCTCCTGAAGGTCCCAATGGCACTGCTTCCAGTTACGACATGTTTGTTACTCAGCGTTCTCATGTAGTGCAGCAAGCCATTCGCCAAGCAGCTGGTGACATGCGTCTCATGAATCCTGTATCCTTGGTAGAGAACCACTCTGCTTGCCGAACAAACAGGGCTGGCCAGAGAGTATTGCCAAATGGCCAGGTTTGGAAGCCTCATTTGTTACTTCTATCTTTTGCCTCTAAAATTCTGGCCGAAGCAAATGCTCTTCTTAAGTTACAAGATAGTCCACCTGGGAAGCCTTATATAGCTCGAGCACGAGCGCCTCCATTACCTTTTCTTTTGTCAACCCTTCTCCAATCACGACCACAGTTAAAGTTGCCGGAGGAGCAGTTTGGTGACGAGGACGGTCTTGATGATGACCTTGATGAGGCATCAGAGTCTGATGATGAGAATGAACATGATGACCTGCCGCCATTTAAACCTTTAACAAAGGCTCAGGTGGAAAAGCTGTCTAAAGCTCATAAAAAAGCATATTTTGATGAGTTAGAGTATAGGGAAAAGCTTTTGATGAAGAAACAATTGAAGGAAGAAAGAAAGCGACGGAAATTGATGAAGAAAATGGCAGAAGCAGCAAAAGATCTACCTAGTGATTACAGTGAAAATGCGGAAGAAGAAGGTGGTGGTGCAGCTTCTGTTCCTGTTCCGATGCCAGATTTGGCCCTTCCTGCATCTTTTGATTCTGATAACCCCACTCACCGGTATCGTTATCTTGATTCATCAAACCAGTGGCTTGTTAGACCTGTTCTAGAAACTCAAGGATGGGATCATGATGTGGGTTATGAAGGCCTGAATGTAGAAAGATTGTTCGTTGTCAAGGACAGGATACCTTTGTCTTTCACGGGTCAGGTTACTAAAGATAAAAAGGATGCTAATGTTCAGATGGAAATAGCCGGCTCAGTTAAGCACGGGGAAGGGAAAGCAACTTCATTAGGATTTGATATGCAGACTGTGGGCAAGGACTTGGCTTATACATTACGCAGTGAGACAAGATTTACTAATTTTAGAAGAAATAAGGCAACCGCTGGTCTTTCATTTACTTTGCTTGGTGATGCCTTATCAGGTGGAGTTAAGATTGAAGACAAATTGGTTGCCAGTAAGCGGTTCAGGGTGGTTATCAGTGGTGGTGCAATGGCAGGGCGCAACGACATTGCATATGGTGGCAGCTTGGAGGCCCAGTTGAGAGATAAAGATTATCCTTTGGGTCGTTTCTTATCTACTCTCGGGCTCTCTGTTATGGATTGGCATGGGGATCTTGCTGTTGGGTGCAATGTGCAATCTCAAATCCCAGTTGGACGACATACGAACCTGGTTGCCCGGGCGAATTTGAACAATCGAGGGGCAGGACAAATAAGTATTCGATTAAACAGTTCGGAACAGCTTCAAATTGCTTTGGTTGCTCTCATTCCTCTCGTAAAGAAGCTAGTTGGTTATCCTCAACAATTGCAGTATGGGCAATATTAA 3645 0.4513 MDYEADGFGANGEGESKRVGEGVSEEIVVGSDSLKSLDVEEDFQEAMEPREQVRDQGSELRPEEAVVDKLDDTNAGSSLTSALVDEQSSDVVQEPDSSKEAIGADSEYGKLGETDLIANQDSKWDGPGNDTVHLDGVDSGVSGDDDFLYGFNGVEEDNLEHNDEIGGKEESGLNSDVEVSDKENGFVVDENSGLTSDKAEFDDTEFKTPRENGGTTLDDVNTDKEDGLDTEVIIESESGVVIPAEGTDDGDLKECDADPKIGDGNTEVKLNDSADSSGDIHDDTYEEVHATSADTTIEQQDEVTRDVKDATLGTDISHEDKNEEETSAPSIQNAELTGYGNGDAEDEISSSLEIPSTKETLPIQEGSAADPNDGSNKDDQAQISDENHRDDENSCVVEEPERIHEKIIKEIGTTQETGEQPVQPSTVVSSTERSADAGPLPVHPSSENSVGAGPTPVRPAGLGRAAPLLEPASRVVQQPRANGTVSNAQAQQMEDSSSGEAEEYDETREKLQMIRVKFLRLAHRLGQTPHNVVVAQVLYRLGLAEQLRGRNGGRVGAFSFDRASAMAEQLEAAGQEPLDFSCTIMVLGKTGVGKSATINSIFDEVKFNTSAFSMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRSNEKILLSVKNFIKKTPPDIVLYLDRLDMQSRDFSDMPLLRTITEIFGPSIWFNAIVVLTHAASAPPEGPNGTASSYDMFVTQRSHVVQQAIRQAAGDMRLMNPVSLVENHSACRTNRAGQRVLPNGQVWKPHLLLLSFASKILAEANALLKLQDSPPGKPYIARARAPPLPFLLSTLLQSRPQLKLPEEQFGDEDGLDDDLDEASESDDENEHDDLPPFKPLTKAQVEKLSKAHKKAYFDELEYREKLLMKKQLKEERKRRKLMKKMAEAAKDLPSDYSENAEEEGGGAASVPVPMPDLALPASFDSDNPTHRYRYLDSSNQWLVRPVLETQGWDHDVGYEGLNVERLFVVKDRIPLSFTGQVTKDKKDANVQMEIAGSVKHGEGKATSLGFDMQTVGKDLAYTLRSETRFTNFRRNKATAGLSFTLLGDALSGGVKIEDKLVASKRFRVVISGGAMAGRNDIAYGGSLEAQLRDKDYPLGRFLSTLGLSVMDWHGDLAVGCNVQSQIPVGRHTNLVARANLNNRGAGQISIRLNSSEQLQIALVALIPLVKKLVGYPQQLQYGQY 1214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01592 1214 MobiDBLite consensus disorder prediction 350 378 - -
Vian5g01592 1214 MobiDBLite consensus disorder prediction 158 226 - -
Vian5g01592 1214 Coils Coil 902 922 - -
Vian5g01592 1214 MobiDBLite consensus disorder prediction 477 497 - -
Vian5g01592 1214 MobiDBLite consensus disorder prediction 35 70 - -
Vian5g01592 1214 MobiDBLite consensus disorder prediction 413 433 - -
Vian5g01592 1214 FunFam Translocase of chloroplast 120, chloroplastic 554 801 - -
Vian5g01592 1214 MobiDBLite consensus disorder prediction 258 506 - -
Vian5g01592 1214 MobiDBLite consensus disorder prediction 379 412 - -
Vian5g01592 1214 PANTHER GTPASE, IMAP FAMILY MEMBER-RELATED 581 1129 IPR045058 -
Vian5g01592 1214 MobiDBLite consensus disorder prediction 274 289 - -
Vian5g01592 1214 NCBIfam chloroplast protein import component Toc86/159, G and M domains 458 1214 IPR005690 GO:0003924|GO:0005525|GO:0009707|GO:0045036
Vian5g01592 1214 ProSiteProfiles AIG1-type G domain profile. 579 808 IPR006703 GO:0005525
Vian5g01592 1214 MobiDBLite consensus disorder prediction 1 141 - -
Vian5g01592 1214 MobiDBLite consensus disorder prediction 195 209 - -
Vian5g01592 1214 CDD Toc34_like 554 799 - -
Vian5g01592 1214 Pfam AIG1 family 582 715 IPR006703 GO:0005525
Vian5g01592 1214 Gene3D - 551 799 IPR027417 -
Vian5g01592 1214 MobiDBLite consensus disorder prediction 73 95 - -
Vian5g01592 1214 MobiDBLite consensus disorder prediction 836 869 - -
Vian5g01592 1214 MobiDBLite consensus disorder prediction 158 185 - -
Vian5g01592 1214 MobiDBLite consensus disorder prediction 840 860 - -
Vian5g01592 1214 Pfam Translocase of chloroplast 159/132, membrane anchor domain 940 1203 IPR024283 -
Vian5g01592 1214 MobiDBLite consensus disorder prediction 921 943 - -
Vian5g01592 1214 MobiDBLite consensus disorder prediction 299 326 - -
Vian5g01592 1214 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 575 716 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01592 Vian-Chr5 38455407 38459051 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01592 - - gmx:100810931 1844.32