Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01588 ATGGCATCGGATAAGGTGGTGGAAACTGTAATAGCAGGGAACTACGTGGAAATGGAAACCGAAGGACAATCGAAGGACGTAAAATCAAGGTTGTCTAACTTCTTGTGGCACGGTGGTTCTGTTTATGATGCTTGGTTCAGCTGTGCTTCCAACCAGGTGGCTCAAGTGCTGCTTACGCTGCCATACTCATTTTCCCAGCTGGGAATGCTTTCTGGCATTCTTTTTCAACTCTTCTACGGTATACTTGGTAGCTGGACGGCTTACCTTATTAGCATACTCTACGTTGAATACAGAACAAGAAAAGAGAGAGAAAAAGTTAACTTCAGAAACCATGTCATCCAGTGGTTTGAAGTTCTTGACGGGCTCCTCGGGAAGCACTGGAGAAACGTGGGGCCCTCCCTTATAGATCCAGCTTTCCTCAGAGAACGCTACTTCTTAGCTTTCAGGGAGATAATGCACGCGATGTGGAAACCTCAAAAGTTCAAGGCTATATATTTATTGGCAACCCTGTATGTGCTGACACTGACGCTTCCATCTGCAGCAGCAGTGTATTGGGCATTCGGAGACATGCTTCTAAATCACTCCAATGCTTTTGCTCTTCTTCCAAAATCACCCTTCCGTGACATGGCTTTTATAACATTCGGGTTTGCATGCACCCCATTGTACTTTGTTTGGGAGAAAGCAATAGGTATGCATGAGTGCAAGAGCTTATGCAAACGTGCTTTGGTGAGATTGCCAGTGGTGATCCCTATATGGTTTCTGGCCATCATCTTCCCCTTCTTTGGTCCCATCAACTCCACCGTTGGCTCTCTCCTTGTCAGCTTCACCGTTTACATCATCCCCGCCCTCGCCCACATCTTCACCTTCAAATCATCCTCTGCCAGACAGAATGCGGTGGAACAACCTCCCAAGTTTGTTGGAAGATGGGTTGGAACCTTTATCATCAACTCGTTTGTAGTGGTATGGGTGCTTGTGGTAGGGTTTGGATTTGGTGGGTGGGCCAGCATGGTTAACTTCATACACCAGATCGACACGTTTGGACTCTTCACAAAGTGTTACCAATGCCCTCCACCGCTTCTGCCACCTATGCCGCCGCAGCAGCTCAATGCCACCGCGCCTTCGCCACTTCACCACCCTCATCTCGGCCACTGA 1152 0.4809 MASDKVVETVIAGNYVEMETEGQSKDVKSRLSNFLWHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQLFYGILGSWTAYLISILYVEYRTRKEREKVNFRNHVIQWFEVLDGLLGKHWRNVGPSLIDPAFLRERYFLAFREIMHAMWKPQKFKAIYLLATLYVLTLTLPSAAAVYWAFGDMLLNHSNAFALLPKSPFRDMAFITFGFACTPLYFVWEKAIGMHECKSLCKRALVRLPVVIPIWFLAIIFPFFGPINSTVGSLLVSFTVYIIPALAHIFTFKSSSARQNAVEQPPKFVGRWVGTFIINSFVVVWVLVVGFGFGGWASMVNFIHQIDTFGLFTKCYQCPPPLLPPMPPQQLNATAPSPLHHPHLGH 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01588 383 PANTHER OS05G0424000 PROTEIN-RELATED 147 321 - -
Vian5g01588 383 Pfam Transmembrane amino acid transporter protein 37 128 IPR013057 -
Vian5g01588 383 Pfam Transmembrane amino acid transporter protein 150 324 IPR013057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01588 Vian-Chr5 38419548 38423343 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01588 150 383 Organic Solute Cotransporters AT2G21050 76.446 1.64e-130 381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01588 K13946 - gmx:100812002 444.506