Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01586 ATGGATCTCACACAACTCTCATGTCTCACTTTCATTGTTCTCCTGTTCTTCACTACCCCAGGGGTTATGGCTGCCACCTTCACATTCGTTAACCGATGCGATTACACGGTGTGGCCTGGCATTCTCGCAAATGCTGGTAGCCCACCACTCCAGAGCACCGGCTTCGAGCTTCCCAAGGACACTTCTCGCACCTTCCAAGCTTCCACCGGCTGGTCCGGTCGCTTCTGGGCCCGAACCGGTTGCACCTTTGACGGATCCGGATCCGGTTCCTGCCTCACTGGCGACTGTGGCTCCGGCCAAGTCGAATGCAACGGCGCGGGAGCCGCCCCGCCGGCCACTCTCGCCGAGTTCACGCTGGGCACCGGAGGCCAAGACTTCTACGACGTCAGCCTCGTCGACGGCTACAACCTTCCCATGATCGTGGAGGGTACTGGCGGGTCGGGTCTATGCGCCACTACGGGGTGCACGTCGGATCTGAACCAGCAATGCCCGGCGGAGCTGAGAGCCTCCGAGGGAAGCGCGTGCAAGAGCGCGTGTGAGGCTTTTGGTAGCCCCGAGTACTGCTGCAACGGCGCGTATGGCTCACCCGCAACCTGTAGGCCCTCCATTTACTCGGAGATGTTCAAGGCAGCTTGCCCAAAATCGTATAGCTACGCTTACGACGACGCTACCAGTACTTTTACGTGTAGCGGCGCTGATTACACCGTTACCTTCTGTCCATCCTCTCCAAGTCAGAAATCGTCACGAGATACCACCACCAACCCCATGCCCTCAACATCATCATCACAAGGGACAGTGACAGGAACAGAAACAGGAACAGGAATGGGATCCGAAGGAGGAGCGGTGGTGTACACGGGTGCGGACAATGGAGTTGTGTATAACTCCGTTACGGCTTCCGGGTCAAGTACAGGATCCGGAGGAGAAACAATGCTGGCAGATGGGTCATATTTAGCTGGGTTGGCGATGGGAGAGTCCTCCCCCAGAAGAACAGTTTCCATGGCGTTTGTGTCCTCAGCTAGCTTTTTGCTTATTTTCACCTTGCTTTAG 1047 0.5692 MDLTQLSCLTFIVLLFFTTPGVMAATFTFVNRCDYTVWPGILANAGSPPLQSTGFELPKDTSRTFQASTGWSGRFWARTGCTFDGSGSGSCLTGDCGSGQVECNGAGAAPPATLAEFTLGTGGQDFYDVSLVDGYNLPMIVEGTGGSGLCATTGCTSDLNQQCPAELRASEGSACKSACEAFGSPEYCCNGAYGSPATCRPSIYSEMFKAACPKSYSYAYDDATSTFTCSGADYTVTFCPSSPSQKSSRDTTTNPMPSTSSSQGTVTGTETGTGMGSEGGAVVYTGADNGVVYNSVTASGSSTGSGGETMLADGSYLAGLAMGESSPRRTVSMAFVSSASFLLIFTLL 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01586 348 ProSiteProfiles Thaumatin family profile. 24 240 IPR001938 -
Vian5g01586 348 MobiDBLite consensus disorder prediction 240 275 - -
Vian5g01586 348 FunFam THAUMATIN-LIKE PROTEIN 1 25 240 - -
Vian5g01586 348 CDD TLP-PA 26 239 - -
Vian5g01586 348 PRINTS Pathogenesis-related protein signature 87 116 IPR001938 -
Vian5g01586 348 PRINTS Pathogenesis-related protein signature 125 141 IPR001938 -
Vian5g01586 348 PRINTS Pathogenesis-related protein signature 74 85 IPR001938 -
Vian5g01586 348 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Vian5g01586 348 PRINTS Pathogenesis-related protein signature 230 239 IPR001938 -
Vian5g01586 348 Pfam Thaumatin family 31 240 IPR001938 -
Vian5g01586 348 PANTHER OS03G0233200 PROTEIN 12 240 IPR001938 -
Vian5g01586 348 SMART tha2 27 240 IPR001938 -
Vian5g01586 348 MobiDBLite consensus disorder prediction 240 274 - -
Vian5g01586 348 Gene3D Thaumatin 25 240 IPR037176 -
Vian5g01586 348 SUPERFAMILY Osmotin, thaumatin-like protein 25 241 IPR037176 -
Vian5g01586 348 ProSitePatterns Thaumatin family signature. 87 103 IPR017949 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01586 Vian-Chr5 38404073 38406190 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01586 9 254 Receptor kinase-like Gene Family AT5G38280 48.047 5.96e-80 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01586 - - gmx:100801173 595.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01586 5 38404073 38406190 Vian5g01586 5 38404073 38406190 ECH