Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01574 ATGGGTTTCTTTAGTGCCATTTTGGGGTTTTTCGGATTCGGGGTTGGGATTTCGATTGGCCTTGTGGCTGGCTATTTTCTCTTCATCTACTTTCAACCCACTAATGTTGAGGATCCTGAAATCAAACCAATGCTGGAGCAAGAGCAAGAGACTTTGCAGCGGATGTTTCCGGAGATTCCTGTTTGGATAAAAAGTCCGGATTTCGATCGGCTTGACTGGCTAAACAAGTTTTTAGAGTACATGTGGCCGTATCTTGATAAGGCAATTTGCAAGACTGCCAGGAACATTGCAAAACCCATAATTGCTGAGCAGATTCCTAAATATAAAATTGATTCTGTTGAGTTTGAAACACTCACGCTGGGTTCGCTGCCGCCAACTTTTCAAGGAATGAAAGTTTATGTGACTGATGAGAAGGAGTTAATTATGGAGCCTTCTGTAAAATGGGCTGGAAATCCTAATGTTACTGTCTCTGTTAAGGCATTTGGGTTGAAAGCAACTGTGCAGGTTGTAGATTTGCAAGCTTTCCTATTGCCTCGCATTACTTTGAAGCCTTTGGTTCCTAGTTTTCCTTGCTTTGCCAACATATATGTCTCCCTCATGGAAAAGCCGCATGTTGACTTTGGGCTAAAGCTCATAGGGGCTGATCTTATGTCTATTCCAGGTGTCTATAGGATCGTTCAGGATATTATCAAAGATCAGGTTGCAAACATGTATTTATGGCCCAAAACCTTGGAAGTTCCAGTTTTAGATATGTCAAAAGCCTTGAAGAGGCCTGTTGGAATTTTACATGTAAAGGTTCTTCAGGCAATGAAGCTAAAGAAAAAAGATCTTCTTGGTGCATCTGACCCCTATGTGAAGCTAAAGCTTACCGATGATAAATTGCCATCGAAAAAGACTACTGTGAAGCACAAGAACTTAAATCCTGAATGGAATGAAGAATTCAATATGATAGTTAAAGATCCTGACTCCCAGGTTTTAGAAATTAATGTTTATGACTGGGAGCAGGTTGGGAAACATGATAAGATGGGTATGAATGTGATATCTTTAAAAGAAGTTTCCCCTGAAGAGCCTAAACGTTTTACTCTTGACCTCCTAAAAAACATGGATCCCAATGATGTCCAAAATGAGAAGTCACGTGGGCAGATTGTTTTAGAACTGACGTATAAACCCTTCAAGGAGGAGGATTTGGCCAAGGGGTTTGACGAGACGCAGACAGTGCCAAAAGCTCCTGAAGGTACTCCAGAAGGTGGAGGTTTGCTTGTAGTTATAGTTCATGAAGCTCAAGATGTCGAAGGGAAGTATCACACTAATCCACATGTACGACTTATATTCAGAGGGGAAGAGAAAAAAACAAAGCGCGTTAAAAAGAATAGGGATCCAAGATGGGAAGATGAGTTCCATTTTATGGTAGATGAGCCTCCCACCAACGATAGATTACACGTGGAGGTTCTCAGCACTTCATCACGAAACCTGCTCCACCAAAAGGAATCACTGGGTTATATCGACATCAATCTTGGGGATGTTGTTGCCAACAAAAGAATTAATGAGAGGTACCATCTCATAGACTCCAAGAATGGTCGCCTCCAGGTAGAGTTGCAGTGGAGAACCTCACAAGCAGGATGA 1623 0.4177 MGFFSAILGFFGFGVGISIGLVAGYFLFIYFQPTNVEDPEIKPMLEQEQETLQRMFPEIPVWIKSPDFDRLDWLNKFLEYMWPYLDKAICKTARNIAKPIIAEQIPKYKIDSVEFETLTLGSLPPTFQGMKVYVTDEKELIMEPSVKWAGNPNVTVSVKAFGLKATVQVVDLQAFLLPRITLKPLVPSFPCFANIYVSLMEKPHVDFGLKLIGADLMSIPGVYRIVQDIIKDQVANMYLWPKTLEVPVLDMSKALKRPVGILHVKVLQAMKLKKKDLLGASDPYVKLKLTDDKLPSKKTTVKHKNLNPEWNEEFNMIVKDPDSQVLEINVYDWEQVGKHDKMGMNVISLKEVSPEEPKRFTLDLLKNMDPNDVQNEKSRGQIVLELTYKPFKEEDLAKGFDETQTVPKAPEGTPEGGGLLVVIVHEAQDVEGKYHTNPHVRLIFRGEEKKTKRVKKNRDPRWEDEFHFMVDEPPTNDRLHVEVLSTSSRNLLHQKESLGYIDINLGDVVANKRINERYHLIDSKNGRLQVELQWRTSQAG 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01574 540 PRINTS C2 domain signature 304 317 IPR000008 -
Vian5g01574 540 PRINTS C2 domain signature 326 334 IPR000008 -
Vian5g01574 540 PRINTS C2 domain signature 277 289 IPR000008 -
Vian5g01574 540 ProSiteProfiles C2 domain profile. 240 362 IPR000008 -
Vian5g01574 540 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 418 536 IPR035892 -
Vian5g01574 540 CDD C2 262 364 - -
Vian5g01574 540 CDD SMP_SYT 60 248 - -
Vian5g01574 540 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 249 IPR031468 GO:0008289
Vian5g01574 540 Gene3D C2 domain 419 537 IPR035892 -
Vian5g01574 540 FunFam Synaptotagmin-2 isoform A 255 410 - -
Vian5g01574 540 Gene3D C2 domain 256 409 IPR035892 -
Vian5g01574 540 FunFam Extended synaptotagmin-2 419 536 - -
Vian5g01574 540 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 67 248 IPR039010 -
Vian5g01574 540 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 255 393 IPR035892 -
Vian5g01574 540 ProSiteProfiles C2 domain profile. 402 518 IPR000008 -
Vian5g01574 540 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 534 IPR045050 GO:0008289
Vian5g01574 540 SMART C2_3c 261 361 IPR000008 -
Vian5g01574 540 SMART C2_3c 419 517 IPR000008 -
Vian5g01574 540 Pfam C2 domain 260 359 IPR000008 -
Vian5g01574 540 Pfam C2 domain 419 520 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01574 Vian-Chr5 38305248 38312289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01574 255 527 Lipid Metabolism Gene Families AT3G61300 27.931 4.15e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01574 - - gmx:100781189 1040.02