Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01572 ATGTCGACAATCAAACTTGCTTTGATTACCTTGCTTTTCATCACTGTTACCAGCGCAGAGAAGAATAAGAATAAGGAAGTCACATACGATAGAAGGTCGCTCATCATCAATGGAAAACGGGAGCTTCTCTTCTCCGGTTCCGTCCATTACACTCGAAGTCCCCCTGAGTTCAAAGTGGATCCGGAGTATGATTTCGTGAAGTTCATGCAGCTCTGTCATGACAAAGGAATGTATGTTACCCTCAGGGTTGGACCTTTCATCCAAGCCGAATGGAATCACGGAGGACTTCCGTATTGGCTAAGAGAGGTTCCTGATATCATATTCCGTTCAAACAATGAAGCCTTTAAGAAATACATGAAAGAATATACAAAAACTGTTATAAAATTATGTAAAGAAGCGAAGCTCTTCGCTCCCCAAGGAGGCCCCATCATCTTGGCACAGATCGAGAATGAGTACAACCATATCCAACGCGCTTTTAGAGAGGACGGAGATAAGTACGTCCAATGGGCTGCAAATTTGGCAGTTGCACTGGATGTTGGAGTTCCATGGATCATGTGCAAACAAACGGATGCTCCTGATCCAGTGGTAAATGCATGCAATGGAAGACACTGTGGTGATACCTTTACAGGCCCTAACAAACCCGACAAGCCTGTCCTGTGGACTGAAAACTGGACTGCTCAGTATAGGGTGTTTGGAGATCCACCATCGCAAAGATCAGCAGAAGACATTGCCTTCTCAGTTGCCCGTTTCTTCTCTAAGAGGGGCTCTTTGATGAACTACTATATGTACTATGGTGGAACAAATTTTGGTAGAACAAGCTCTGCCTTCAGTACAACCCGATATTACGATGAAGCCCCTCTTGATGAGTTCGGTTTGCAGAGAGACCCAAAATGGAGTCACCTGAGAGACGTGCACAAGGCATTGACCCTATGCAGACAGTCCCTGTTCGGTGCTGAATCGACGACCGTAAAAGTTAACCAGCATCATGAGGTTGCTTCACAACATAATTCAAGGAACTTCAAGAAGTCAAAAAATGCAAACAATTTCAAGTGGGAGGTGTTTACGGAAACCATTCCAGTCGCCAAGGATATACCAGTTAGTGGAAATGTCCCCGCTGAACTTTATAGCTTGCTTAAAGACACCACAGACTATGCATGGTACACCACCAGCGTGGAATTGGGTCCGGAAGACTTGCCAAAGAAGAGTGACGTATCCACCGTTATTCGTATTTTGAGTCTTGGCCATTCACTGCATACCTTTGTAAATGGAGAATTTATTGGAACAAATCATGGTACCCATGAAGAGAAAGGTTTTGAATTCCAGAAAGCTGTAAACTTCAAGGTTGGAGTTAACAACATAGCTATCTTGGCTACCACTATTGGACTCCCTGACAGTGGTGCATACATGGAGCACAGGTATGCTGGACCGAAGTCTATACTCATCCTTGGTCTTAACTCAGGAAAAATTGATCTGACTTCTAATGGTTGGGGCACTAAGGTTGGAATCCAAGGAGAGGAGTACGCCGTTTTCACTGAGGAGGGATCAAAGAAAGTAGAATGGAAAGAGGCCAAGGGAAATGGAAAGTCTCTCTCGTGGTACAAGACAACTTTTACAACACCAGAGGGAAGGGATCCTGTAGCCATAAAGATGACTGGTATGGGGAAGGGAATGATTTGGATCAATGGTAAAAGCATTGGTCGTCATTGGATGAGTTTCCTCTCTCCCCTTGGAAGCCCTACTCAGTCAGAGTACCACATCCCAAGGACTTACTTAAATCAAAAAGACAATCTCCTTGTGATATTTGAGGAAGAGCCATCAGACCCAAGTCAGATAGAGATTCAAACGGTTGACAGAGATACAATATGCAGTATTATCACAGAGAATCACCCTCCCAACGTCAATTCCTGGGCATCTAAGGGTGGCAAGTTCCAGACTGTTGTGGAAAATCCGAAGCCAACAGCTACAGTCACATGTCCAACCTACAAAACCATTAAGACTGTGGAGTTTGCAAGCTTTGGTGATCCCACGGGTGTCTGTGGAGAGTTTGTTATGGGAAAATGTGATGCCTCTGCCACCAAGCAGATTATTGAACAGGCAAACCTCTCGTTTCTTTCTTTGCAAAATACCAACTAA 2133 0.4444 MSTIKLALITLLFITVTSAEKNKNKEVTYDRRSLIINGKRELLFSGSVHYTRSPPEFKVDPEYDFVKFMQLCHDKGMYVTLRVGPFIQAEWNHGGLPYWLREVPDIIFRSNNEAFKKYMKEYTKTVIKLCKEAKLFAPQGGPIILAQIENEYNHIQRAFREDGDKYVQWAANLAVALDVGVPWIMCKQTDAPDPVVNACNGRHCGDTFTGPNKPDKPVLWTENWTAQYRVFGDPPSQRSAEDIAFSVARFFSKRGSLMNYYMYYGGTNFGRTSSAFSTTRYYDEAPLDEFGLQRDPKWSHLRDVHKALTLCRQSLFGAESTTVKVNQHHEVASQHNSRNFKKSKNANNFKWEVFTETIPVAKDIPVSGNVPAELYSLLKDTTDYAWYTTSVELGPEDLPKKSDVSTVIRILSLGHSLHTFVNGEFIGTNHGTHEEKGFEFQKAVNFKVGVNNIAILATTIGLPDSGAYMEHRYAGPKSILILGLNSGKIDLTSNGWGTKVGIQGEEYAVFTEEGSKKVEWKEAKGNGKSLSWYKTTFTTPEGRDPVAIKMTGMGKGMIWINGKSIGRHWMSFLSPLGSPTQSEYHIPRTYLNQKDNLLVIFEEEPSDPSQIEIQTVDRDTICSIITENHPPNVNSWASKGGKFQTVVENPKPTATVTCPTYKTIKTVEFASFGDPTGVCGEFVMGKCDASATKQIIEQANLSFLSLQNTN 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01572 710 CDD Gal_Rha_Lectin_BGal 645 701 - -
Vian5g01572 710 PRINTS Glycosyl hydrolase family 35 signature 528 542 IPR001944 GO:0004553|GO:0005975
Vian5g01572 710 PRINTS Glycosyl hydrolase family 35 signature 555 571 IPR001944 GO:0004553|GO:0005975
Vian5g01572 710 PRINTS Glycosyl hydrolase family 35 signature 275 291 IPR001944 GO:0004553|GO:0005975
Vian5g01572 710 PRINTS Glycosyl hydrolase family 35 signature 37 54 IPR001944 GO:0004553|GO:0005975
Vian5g01572 710 Gene3D Glycosidases 58 311 - -
Vian5g01572 710 SUPERFAMILY Galactose-binding domain-like 494 642 IPR008979 -
Vian5g01572 710 SUPERFAMILY Galactose-binding domain-like 340 476 IPR008979 -
Vian5g01572 710 FunFam Beta-galactosidase 498 622 - -
Vian5g01572 710 Pfam Glycosyl hydrolases family 35 58 307 IPR031330 -
Vian5g01572 710 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 140 152 IPR019801 GO:0004553|GO:0005975
Vian5g01572 710 Gene3D - 322 474 - -
Vian5g01572 710 SUPERFAMILY (Trans)glycosidases 24 311 IPR017853 -
Vian5g01572 710 FunFam Beta-galactosidase 53 311 - -
Vian5g01572 710 Gene3D - 498 628 - -
Vian5g01572 710 PANTHER BETA-GALACTOSIDASE RELATED 56 641 IPR001944 GO:0004553|GO:0005975
Vian5g01572 710 Pfam Beta-galactosidase jelly roll domain 518 600 IPR025300 -
Vian5g01572 710 Gene3D Glycosidases 14 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01572 Vian-Chr5 38271036 38275298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01572 63 701 Glycoside Hydrolase AT4G38590 52.286 0.0 758
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01572 - - gmx:100780092 1077