Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01568 ATGGCGGAAGAGTATAATGAAGGTGAAGTTGAAGAAGAGTTCTCCGTTTGGAAGAAGAATACTCCTCTGTTGTACGATTTGTTCATTTCTCATCCTCTTCAATGGCCCTCTCTCACTGTTCACTGGCTTCCTTCCTCTCCCCAACCCCACTCCCACCCTTCCTTCAATGTCCACAAACTCCTCCTCGCTACTCACACTGCCCAGGGCGAACCCAATTTCCTCATGCTCGCCGACGCATCCCTCCCCGCCGACACCTCACAACCCATCGTTGCCGCCGACCCTGCCGACCCGGTTCTACCCAAGGTAGAAATTTCCCAAAAGGTTGCTGTTGACGGGGAGGTGAATCGAGCGCGTTGTATGCCGCAGAACCCTGCTATTGTTGCTGCGAAGACATGTAATTCCGAGGTTTATGTGTTTGATTTCAACAAGCAGCGTGGGAGCGAGTTTGCCCCTGATTCGAGGTTAAGGGGTCATGATAAAGAGGGCTATGGTTTGTCTTGGAGCCCTTTCAAGAGTGGGTATCTTTTGAGTGGTTCGCATGACCATAAGATTTGCTTGTGGGACGTGCCTGCTGCTTCTCAAGAGAGTGTGATTGATGCAGTTCATGTTTACGAGGGTCATGAGAGTGTGGTTGAAGATGTGTCCTGGAATATGAAGGACGAGAATCTGTTTGGATCTGTAGGAGATGACTTTAAATTGGTCATTTGGGACTTACGGACTAACAAACCCCAACAATCAGTCAAACCACATGATAACGAGGTTAACTTTCTTTCATTCAGTCCATATAACCAATGGATTTTGGCTACAGCATCTTCAGATACAAGTGTTGGTCTATTTGACATTCGGAAGCTGGAAATTCCACTACATTTTTTAAGTAGCCACACCGATGAAGTATTCCAGGTTGAGTGGGATCCTAATCACGAGACTGTGTTGGCATCATCTGGCGCTGACAGACGGCTGATGGTTTGGGATCTTAGCAGGATCGGAGATGAGCAGATAGAGGGAGATGGTGAGGGTGGCCCCACCGAATTACTCTTCTCTCACGGGGGTCACAAAGGGAAAATATCAGATTTTTCATGGAACAAAAGTCAGCCATGGGTTATCTCAAGTGTAGCTGAGGACAATTCTTTCCATGTATGGCAAATGGCAGAGAACATTTACAGTGACGGCGACGATGACAACATGTGGACGGCCAATGATTAA 1203 0.4763 MAEEYNEGEVEEEFSVWKKNTPLLYDLFISHPLQWPSLTVHWLPSSPQPHSHPSFNVHKLLLATHTAQGEPNFLMLADASLPADTSQPIVAADPADPVLPKVEISQKVAVDGEVNRARCMPQNPAIVAAKTCNSEVYVFDFNKQRGSEFAPDSRLRGHDKEGYGLSWSPFKSGYLLSGSHDHKICLWDVPAASQESVIDAVHVYEGHESVVEDVSWNMKDENLFGSVGDDFKLVIWDLRTNKPQQSVKPHDNEVNFLSFSPYNQWILATASSDTSVGLFDIRKLEIPLHFLSSHTDEVFQVEWDPNHETVLASSGADRRLMVWDLSRIGDEQIEGDGEGGPTELLFSHGGHKGKISDFSWNKSQPWVISSVAEDNSFHVWQMAENIYSDGDDDNMWTAND 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01568 400 ProSitePatterns Trp-Asp (WD) repeats signature. 175 189 IPR019775 -
Vian5g01568 400 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 155 189 - -
Vian5g01568 400 PRINTS G protein beta WD-40 repeat signature 311 325 IPR020472 -
Vian5g01568 400 PRINTS G protein beta WD-40 repeat signature 175 189 IPR020472 -
Vian5g01568 400 PRINTS G protein beta WD-40 repeat signature 267 281 IPR020472 -
Vian5g01568 400 FunFam WD-40 repeat-containing protein MSI1 1 399 - -
Vian5g01568 400 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 291 326 - -
Vian5g01568 400 SUPERFAMILY WD40 repeat-like 112 382 IPR036322 GO:0005515
Vian5g01568 400 ProSiteProfiles Trp-Asp (WD) repeats profile. 204 246 IPR001680 GO:0005515
Vian5g01568 400 Pfam WD domain, G-beta repeat 201 237 IPR001680 GO:0005515
Vian5g01568 400 Pfam WD domain, G-beta repeat 242 280 IPR001680 GO:0005515
Vian5g01568 400 Pfam WD domain, G-beta repeat 287 324 IPR001680 GO:0005515
Vian5g01568 400 Pfam WD domain, G-beta repeat 345 380 IPR001680 GO:0005515
Vian5g01568 400 Pfam WD domain, G-beta repeat 155 188 IPR001680 GO:0005515
Vian5g01568 400 Gene3D - 1 398 IPR015943 GO:0005515
Vian5g01568 400 ProSiteProfiles Trp-Asp (WD) repeats profile. 155 197 IPR001680 GO:0005515
Vian5g01568 400 SMART WD40_4 240 280 IPR001680 GO:0005515
Vian5g01568 400 SMART WD40_4 284 324 IPR001680 GO:0005515
Vian5g01568 400 SMART WD40_4 148 188 IPR001680 GO:0005515
Vian5g01568 400 SMART WD40_4 197 237 IPR001680 GO:0005515
Vian5g01568 400 SMART WD40_4 341 381 IPR001680 GO:0005515
Vian5g01568 400 PANTHER WD40 REPEAT FAMILY 2 392 - -
Vian5g01568 400 ProSitePatterns Trp-Asp (WD) repeats signature. 311 325 IPR019775 -
Vian5g01568 400 Pfam Histone-binding protein RBBP4 or subunit C of CAF1 complex 12 82 IPR022052 -
Vian5g01568 400 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 204 242 - -
Vian5g01568 400 ProSiteProfiles Trp-Asp (WD) repeats profile. 291 326 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01568 Vian-Chr5 38243983 38246965 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01568 204 383 Miscellaneous Gene Families AT5G08390 20.556 3.04e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01568 K10752 - gmx:100791834 716.842