Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01566 ATGGCTATTCAAACGCAGTGGTATCCCAATAATTCTGCTTCTCCATTCTGGAACAATGGTCATTGTGCTCCTGCCTTTATCGATTCCGGCATCAGTTTTCAGCACAAGCATCAGCAACAGCTGCCGGAACAGCATTTGGGAGAGTTATGCAATGGGAGTCAGGGAGGAACCTTTGATCCAAATCTTCATGTCTGTAGTTCAAAAGGGATGAATTCCCCTACGTTTGCTGTTCAGTTTCAGAAACAATGGGAAGAGATTGATCAGTATATGAAATCTGAGGATGAGAAATTGAGATATATGATAAAAGAACACGGGAAACAACAGGTGATGGCATTGTTGAAAAAACTGGAAACTCGTACGCTTCATGTCCTCAGGGAAAAAGATGTAGAAATTGCACAAGCCATGAAGAGAAGGTTAGAGTTAGAAGAGTATTTGAGGAAGTTAGAGGCGGAAAACAACAGATGGCAGAGGTTGGCTCAGGAGAAGGAAAACATGGCATTGTCTCTATACAAAACGCTGGAGGAAATGACAGAAGGTGGAAACTTTTTGAACAATGGGGCAGTGGCAAATGATGCAGTGTCTTGCTGTGGCGAGACTGGAGGAACAGAAGAGAGGGAAGAAGAAGGAACTGCAGAAAAAGGTTTAGAATGTGGAGGGGTGAATGAAGTTGAACAGATTACGAGAAAAGGAGGAGTAATGCTTTGTAAAAGCTGCCATTCTAGGAGCTCGTGCTTTCTGTTCCTCCCATGCAGGCACCTTTCTTCCTGCAAAGTTTGCAACGCTTCCCTCGAGGCTTGCCCCGTCTGCAGAACACCAAAGAAGGCTACCATTGAGTTGAGACTTTGA 846 0.4433 MAIQTQWYPNNSASPFWNNGHCAPAFIDSGISFQHKHQQQLPEQHLGELCNGSQGGTFDPNLHVCSSKGMNSPTFAVQFQKQWEEIDQYMKSEDEKLRYMIKEHGKQQVMALLKKLETRTLHVLREKDVEIAQAMKRRLELEEYLRKLEAENNRWQRLAQEKENMALSLYKTLEEMTEGGNFLNNGAVANDAVSCCGETGGTEEREEEGTAEKGLECGGVNEVEQITRKGGVMLCKSCHSRSSCFLFLPCRHLSSCKVCNASLEACPVCRTPKKATIELRL 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01566 281 Coils Coil 131 165 - -
Vian5g01566 281 PIRSF SBP1_RNase_bind 24 281 IPR017066 -
Vian5g01566 281 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 203 279 IPR013083 -
Vian5g01566 281 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 72 278 IPR017066 -
Vian5g01566 281 ProSiteProfiles Zinc finger RING-type profile. 235 270 IPR001841 -
Vian5g01566 281 Pfam Zinc finger, C3HC4 type (RING finger) 234 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01566 Vian-Chr5 38232609 38233558 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01566 234 271 Miscellaneous Gene Families AT2G21380 42.105 7.77e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01566 K19042 - gmx:100813629 390.963