Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01563 ATGGAAGTTAACCTCTCTCTCAACCGCCACCGCGCCCTCTCTCTCACCTCCAGCGCTCCCTCTCTCTCCGCTCTCCGCTCGCACTTCCTCGCCTCCACTCACTCTCTCCGTCTTCCTCTCTCGCCACCCTCCCTTCGCTCCCGGAACAAACGCACCACCAGCCGCAACTTAGGCATCCTCCGCTTCCACTCCCCGCGCTTCGTCTTCAAGGCCTCCTTCCATTCCCACTCCGTCGTCGTCCTCGTCATCGTCGTCACTTTATCCGCCGTTTCCTGGCTCCACTTCACTCTCACCAAGAAAAAAAACAAGTCTCTTAACCAGACACGGGGGCTTACGAATTTCGCATTATCGCCTCAGGGAACTAATGTTGGGAGTCAGGTCATTGATGGCGAGATTCTTGGTTTTACGGAATTTCAAAGGGATAACACGCTGACTGAGATTGGGAAGTTGAAGGATCACCATGGGGAAGAGTACCGGGTCTTTGAGGAAAACGAGATCCACCTCCCGTTTTTGAAATCTTCAGTGGTACAAGAAGTGGCCATCGCCACCGAGACTTCAGAGTCATCTTCTGTTTTTGACTCTGGTTTGAATAATAATAATAATAGTAATAGTTCCAAGGTATTGGATGAGTCTTTTTTATCTGTCGCTTTCTCATCAACTTCGTTACCACCTCTAGAGTTTGCTGAGGAAATGGCTATACAAGTGGAAGAAAGTCAAGATAAAGTTAACTCTGATCCCGAGTTGCCTTTAATTGACGTCGAATCCGAGCATACTGCTTCGTCTGTTCGCGTAAACAACGCACTGGCGACTGTTGGTGGACGTACTAAAGAAAAGGTTGAGCTTGGTGCCATCAATGGTGACGTCCTTTTTGGGGAGTCAGTTAGGGAAGGGCTGTACATGTTTTATGAGGTTAACAAGCCTGCAACTGGATCTATGACACCGCTGAGTGGTGTAAAGTCATTATCTCCCCGTGCTTCTTTTATGAATAAAAAACGGTCGCCCTCAGTGATGGGAAATGCCACACTGAAAGGAACAGGGTTATCTACAGATATTCCTCTACAAGATGCAGGTAATTTACAACATGTCAAAGGAGCAGCTGAACTTTCCAACAGGGAAAGGACCAACATGGATTACAATAATAACACAAAAAATGATCCTTCAAAGCATCTAAGCAAATATAATAATTTGCTAAAACTTGGGAGGCTACATGAATGTGTAGAAGTGCTTAAACATATGGAAACAAAGGGTTTATTAGACATGACTAAGGTTTATCATGCCAAGTTTTTTAACACCTGCAAGAAACGAAAGGCCGTTAAAGAAGCTTTTGATTTCATTAAGCTCATTCCAAATCCAACGCTGAGTACATTTAACATGCTTATGTCGGTGTGCGCAAGCTCCCAAGATTCAGAAAGGGCTTTCCATGTTTTGCAGCTTCTTAAGAATGCTCAACTAGAACCTGATTGCAAACTTTATACCACTCTGATATTAACTTGTGCAAAGAGTGGGAAAGTTGATCTAATGTTTGAAGTGTTTCACAAGATGGTTAATTCTGGAGTGGAACCTAACGTTCATACCTATGGGGCACTTATTGATGGCTGTGCTAGAGCTGGGCAAATAGCCAAAGCATTTGGCGCTTATGGAATACTGAGGTCAAAGAATGTGAAGCCAGATCGTGTAGTATTCAATGCACTTATAGCTGCTTGTGCCCAATCAGGAGCTGTAGATCGTGCTTTTGATGTTTTAGCAGAAATGGCAGCTGAAACGCAGCCCATTGACCCTGATCACGTAACAATAGGTGCATTGTTGAAGGCATGCACTAAAGCTGGTCAGGTTGATCGTGCAAAAGAAGTGTACAAGATGGTACAAAAATATAGCATAAAGGGATGCCCCGAAGTTTACACCATTGCCATTAATTCGTGCAGCGAAACAGGGGATTGGGAATTTGCTATTGCTGTATACAATGACATGACCCAGAAAGGGATCCTCCCAGATGAGATATTTCTGAGTGCACTGATAAATGTTGCTGGTCATGCTAAAAATCTGGATGCTGCCTTTGATGTTCTACAAGAAGCCCGTGAAAGAGGAATACGAATTGGAATAACATCATATAGCTCATTGATGGGTGCATGTAGTAATGCAAGAAATTGGCAGAAAGCATTGGAGCTATATGAATATCTTAAGTCTCTTAAATTGACAATAACAGTTTCAACAGTTAATGCTTTGCTCACTGCACTGTGTGATGGAGATCAATTTCAAAAGGCTTTGGAAGTTTTTTTTGAAATGAAAGGATTAGGATTGTGCCCAAACAGTATCACATTCTCGATACTTATAGTGGCAAGTGAGAAAAAGGATGATATGGAGGCAGCTCAAATGCTTCTTTCTGAAGCCAAAAAAGATGGTGTAGTCACTAATCTCATAATTTGTCGATGCATAATTGGAATGTGCCTGCGGAGATTTGAGAAGGCTTGCATTGTTGGTGAGCCTGTTTTATCTTTTCACTCAGAGCGGCCACAAGTTGATAATAAATGGACATCGCTGGCCTTAATGGTGTTTCGTGAAACAATTGAAGCTGGTCAAAAACCTACAAGTGAAATATTGTCACAAATTCTGGGCTGCCTGCAACTTCCTTATGATACATCTCTGAAAAATAGACTTGTTGAGAACCTAGGAGTTAGTGCAGATACTTCAAGAGGATCAAACCTCTGTTCATTAATTGATGGATTTGGTGAATACGATCCTCGTGCTTTCTCTATACTTGAGGAATCTGCTTCATATGGAGTTGTTCCATTTGTATCATTTAAAACGAGTCCCATTGTTATTGATGCTAAAGAATTACATGCTTCTACTGCTGAGGTGTACCTCATAACAATTTTGAAAGGTCTCAAGCATAGACTGGCAGCAGGTGCAAGATTGCCCAACATAATAATTTTATTGACTGTAGAGAAAACAGAAGTTGTGTCTCAGAAGGGGGAGAAGATTATTAACCTTGCTGGAAGAGCTGGCCAAGCAATTGGAGCGTTATTGAGGAGGCTTCAGATTCCTCATCAGGGTAATGAATCGAATGGTAAGATTCGAATTCATGGTGCGGCTCTGAAAAAATGGTTTCAGCCCAAACTTGCATCTCCATTCAGCGGAAAACCAGGTGATTGGAGTTCCTCCATGTCACGACTGGGTAAAGGTATCAGTCATCAGCAACGAAACATCCGACTTGGCAATCTGTCTTTGGACTAA 3231 0.429 MEVNLSLNRHRALSLTSSAPSLSALRSHFLASTHSLRLPLSPPSLRSRNKRTTSRNLGILRFHSPRFVFKASFHSHSVVVLVIVVTLSAVSWLHFTLTKKKNKSLNQTRGLTNFALSPQGTNVGSQVIDGEILGFTEFQRDNTLTEIGKLKDHHGEEYRVFEENEIHLPFLKSSVVQEVAIATETSESSSVFDSGLNNNNNSNSSKVLDESFLSVAFSSTSLPPLEFAEEMAIQVEESQDKVNSDPELPLIDVESEHTASSVRVNNALATVGGRTKEKVELGAINGDVLFGESVREGLYMFYEVNKPATGSMTPLSGVKSLSPRASFMNKKRSPSVMGNATLKGTGLSTDIPLQDAGNLQHVKGAAELSNRERTNMDYNNNTKNDPSKHLSKYNNLLKLGRLHECVEVLKHMETKGLLDMTKVYHAKFFNTCKKRKAVKEAFDFIKLIPNPTLSTFNMLMSVCASSQDSERAFHVLQLLKNAQLEPDCKLYTTLILTCAKSGKVDLMFEVFHKMVNSGVEPNVHTYGALIDGCARAGQIAKAFGAYGILRSKNVKPDRVVFNALIAACAQSGAVDRAFDVLAEMAAETQPIDPDHVTIGALLKACTKAGQVDRAKEVYKMVQKYSIKGCPEVYTIAINSCSETGDWEFAIAVYNDMTQKGILPDEIFLSALINVAGHAKNLDAAFDVLQEARERGIRIGITSYSSLMGACSNARNWQKALELYEYLKSLKLTITVSTVNALLTALCDGDQFQKALEVFFEMKGLGLCPNSITFSILIVASEKKDDMEAAQMLLSEAKKDGVVTNLIICRCIIGMCLRRFEKACIVGEPVLSFHSERPQVDNKWTSLALMVFRETIEAGQKPTSEILSQILGCLQLPYDTSLKNRLVENLGVSADTSRGSNLCSLIDGFGEYDPRAFSILEESASYGVVPFVSFKTSPIVIDAKELHASTAEVYLITILKGLKHRLAAGARLPNIIILLTVEKTEVVSQKGEKIINLAGRAGQAIGALLRRLQIPHQGNESNGKIRIHGAALKKWFQPKLASPFSGKPGDWSSSMSRLGKGISHQQRNIRLGNLSLD 1076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01563 1076 MobiDBLite consensus disorder prediction 1043 1062 - -
Vian5g01563 1076 NCBIfam pentatricopeptide repeat 596 626 IPR002885 -
Vian5g01563 1076 NCBIfam pentatricopeptide repeat 455 488 IPR002885 -
Vian5g01563 1076 NCBIfam pentatricopeptide repeat 490 523 IPR002885 -
Vian5g01563 1076 NCBIfam pentatricopeptide repeat 632 665 IPR002885 -
Vian5g01563 1076 NCBIfam pentatricopeptide repeat 737 769 IPR002885 -
Vian5g01563 1076 NCBIfam pentatricopeptide repeat 702 731 IPR002885 -
Vian5g01563 1076 NCBIfam pentatricopeptide repeat 524 557 IPR002885 -
Vian5g01563 1076 Pfam PPR repeat 396 417 IPR002885 -
Vian5g01563 1076 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 699 733 IPR002885 -
Vian5g01563 1076 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 734 768 IPR002885 -
Vian5g01563 1076 Gene3D Tetratricopeptide repeat domain 539 693 IPR011990 GO:0005515
Vian5g01563 1076 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 452 486 IPR002885 -
Vian5g01563 1076 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 557 591 IPR002885 -
Vian5g01563 1076 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 487 521 IPR002885 -
Vian5g01563 1076 FunFam Pentatricopeptide repeat-containing protein MRL1, chloroplastic 401 532 - -
Vian5g01563 1076 FunFam Pentatricopeptide repeat-containing protein MRL1, chloroplastic isoform X1 587 678 - -
Vian5g01563 1076 Gene3D Tetratricopeptide repeat domain 407 538 IPR011990 GO:0005515
Vian5g01563 1076 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MRL1, CHLOROPLASTIC 13 363 - -
Vian5g01563 1076 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 594 628 IPR002885 -
Vian5g01563 1076 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 522 556 IPR002885 -
Vian5g01563 1076 Coils Coil 779 799 - -
Vian5g01563 1076 Gene3D Tetratricopeptide repeat domain 762 825 IPR011990 GO:0005515
Vian5g01563 1076 Gene3D Tetratricopeptide repeat domain 694 761 IPR011990 GO:0005515
Vian5g01563 1076 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 629 663 IPR002885 -
Vian5g01563 1076 Pfam Pentacotripeptide-repeat region of PRORP 602 744 IPR033443 -
Vian5g01563 1076 Pfam Pentacotripeptide-repeat region of PRORP 431 588 IPR033443 -
Vian5g01563 1076 FunFam Pentatricopeptide repeat-containing protein MRL1 chloroplastic 679 826 - -
Vian5g01563 1076 MobiDBLite consensus disorder prediction 1046 1062 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01563 384 804 Glycosyltransferase AT1G05670 24.235 3.35e-32 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01563 - - gmx:100814164 1715.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01563 5 38197198 38206650 Vian5g01563 5 38197198 38206650 ECH