Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01546 ATGGCTGTGGAGGAAGCTGTATCTATGAAACAAGATTTTGATCCTCAAAACAAACCCAAAAGAAACAAGTTTGCTTTAGCTTGTGCCATTTTAGCTTCCATGACTTCTATCTTACTAGATATTGGAGTCATGAGTGGAGCAGCTTTGTACATACAACGAGATCTCAGAGTGTCGGATGTGAAAATCGAAATCCTGAATGGTATCATCAACCTCTACTCGCCGGTCGGTTCTTTCATCGCCGGCAGAACCTCAGACTGGATAGGTCGGCGCTACACCATTGCTCTCGCCGGCATAATCTTCTTCGTCGGAGCAATCCTCATGGGATTCTCCCCTAACTACGCCTTTCTCATGTTTGGCCGCTTCTTCGCCGGCGTTGGCGTTGGCTTCGCCTTCCTCATCGCCCCTGTCTACACCTCCGAAATCTCCCCTACCTCCTCTCGCGGCCTCCTCACATCCTTGCCAGAGATATTCCTGAACGGAGGGATTCTGATAGGATACATTTCAAACTATGGATTTTCGAAGATGTCGCTTCGGCTGGGATGGCGGCTCATGCTTGGAGTGGGAGCCGTTCCGGCCATGTTTCTAGCCGCGGTAGTGCTAGTCATGCCGGAGTCACCGAGGTGGCTGGTGGCGCAAGGTCGACTAGGCGAAGCCAAAAAAATTCTGTACAAAATCTCCGACTCCGAGGAAGAGGCTCGGCTAAGGCTAGCCGACATAAAAGAGACGGCTGGGATCCCTCAGGACTGCGACGACGACGTCGTATTAGTGAACAAGCAAAGTCACGGGCAAGGTGTATGGAAAGAACTTTTCCTCCACCCCACGCGCCCGGTTCTCCACATCTTCGTCGCGTCGCTTGGGATTCACTTCTTCGCGCAAGCCACGGGCATCGACGCCGTCGTTTTGTACAGCCCGAGAATCTTCCATAGCGCCGGAATCAAATCCGATAACTACCTTCTCCTGGCGACGGTGGCGGTTGGGTTCGTGAAAACCGTTTCCATTTTGGTTGCCACGTTTTTGTTGGACCGGGCCGGGCGGCGCGTGTTGCTTTTGTGCAGCGTCAGTGGACTGATATTTTCGCTTGTGACACTGGGTGTGAGTCTCACCGTGGTGGACCATTCTAGGTCGACTCTGACGTGGGCCATTGGGCTTAGCATCGCTGCAGTGTTGGCTTATGTAGCTACTTTCTCGATTGGGTCGGGGCCCATCACGTGGGTGTATAGCTCGGAGATTTTCCCGCTTAGATTGCGCGCTCAGGGCGTGGCTATTGGAGCCATTGTGAATAGGGTGACGAGTGGAGTGATCGCAATGACTTTTCTGTCCCTCTGTAAGGCCATTTCAACTGGAGGTGCTTTTTTTCTCTTCGCCGCCATCGCTGTTGCTGCGTGGATTTTTCACTACACCATGCTCCCCGAAACACGCGGGAAGACTCTTGAGGAAATCGAAGGCTCTTTCGGTCATTTCTGGAGGAACCCTAATAAACCCAAAGGACTTCATGGCACTAACGGCGATATCCCGTTAACGAGCAGTGTTAAAACTTCCACAAACGTTGATTAG 1554 0.5206 MAVEEAVSMKQDFDPQNKPKRNKFALACAILASMTSILLDIGVMSGAALYIQRDLRVSDVKIEILNGIINLYSPVGSFIAGRTSDWIGRRYTIALAGIIFFVGAILMGFSPNYAFLMFGRFFAGVGVGFAFLIAPVYTSEISPTSSRGLLTSLPEIFLNGGILIGYISNYGFSKMSLRLGWRLMLGVGAVPAMFLAAVVLVMPESPRWLVAQGRLGEAKKILYKISDSEEEARLRLADIKETAGIPQDCDDDVVLVNKQSHGQGVWKELFLHPTRPVLHIFVASLGIHFFAQATGIDAVVLYSPRIFHSAGIKSDNYLLLATVAVGFVKTVSILVATFLLDRAGRRVLLLCSVSGLIFSLVTLGVSLTVVDHSRSTLTWAIGLSIAAVLAYVATFSIGSGPITWVYSSEIFPLRLRAQGVAIGAIVNRVTSGVIAMTFLSLCKAISTGGAFFLFAAIAVAAWIFHYTMLPETRGKTLEEIEGSFGHFWRNPNKPKGLHGTNGDIPLTSSVKTSTNVD 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01546 517 MobiDBLite consensus disorder prediction 495 517 - -
Vian5g01546 517 PRINTS Sugar transporter signature 117 136 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vian5g01546 517 PRINTS Sugar transporter signature 291 301 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vian5g01546 517 PRINTS Sugar transporter signature 408 420 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vian5g01546 517 PRINTS Sugar transporter signature 385 406 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vian5g01546 517 MobiDBLite consensus disorder prediction 502 517 - -
Vian5g01546 517 FunFam probable polyol transporter 4 18 487 - -
Vian5g01546 517 SUPERFAMILY MFS general substrate transporter 14 481 IPR036259 -
Vian5g01546 517 ProSitePatterns Sugar transport proteins signature 2. 122 147 IPR005829 GO:0016020|GO:0022857|GO:0055085
Vian5g01546 517 NCBIfam sugar porter family MFS transporter 17 480 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vian5g01546 517 ProSitePatterns Sugar transport proteins signature 1. 80 97 IPR005829 GO:0016020|GO:0022857|GO:0055085
Vian5g01546 517 Gene3D MFS general substrate transporter like domains 18 486 IPR036259 -
Vian5g01546 517 ProSiteProfiles Major facilitator superfamily (MFS) profile. 26 473 IPR020846 GO:0022857
Vian5g01546 517 PANTHER SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER 21 489 IPR045262 GO:0015144
Vian5g01546 517 Pfam Sugar (and other) transporter 37 482 IPR005828 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01546 Vian-Chr5 38029944 38031937 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01546 15 496 Organic Solute Cotransporters AT3G18830 65.298 0.0 656
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01546 - - gmx:100816478 801.201