Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01542 ATGGCCTCTGCATCACCCTCTCTGCTCAAGTCTTCACTTGTTCTTGACAAGTCTGAGTGGGTGAAGGGTCAATCCCTTCGCCAACCTTCTGCATCAGTGGTCAGATGCAGCCCCACCAACCCTTCAGCCCTCACCATCAGAGCTGGTTCATATGCTGAGGAGCTTGTTAAGACCGCGAAAACTGTGGCTTCACCAGGGAGGGGAATTTTGGCCATGGATGAGTCCAATGCTACCTGTGGGAAGCGTTTGGCGTCAATTGGGCTAGAGAATACTGAAGCTAACCGCCAGGCATACCGTACCCTTCTTGTGACAGTTCCAGGCCTTGGTCAATACATCTCTGGTGCCATTCTCTTTGAGGAAACTCTCTACCAATCCACAATTGATGGCAAGAAGATTGTTGATGTTCTCATTGAGCAAAACATTGTTCCTGGTATTAAGGTCGACAAGGGTTTGGTTCCTCTTGTTGGCTCCAACGATGAGTCATGGTGCCAAGGTTTGGATGGTCTTGCCTCTCGCTCAGCTGCATACTATCAGCAAGGTGCCCGTTTCGCCAAATGGCGTACTGTTGTGAGTATCCCCAACGGTCCCTCTGCTCTGGCTGTCAAGGAAGCAGCCTGGGGTCTGGCCCGCTATGCTGCAATTTCTCAGGACAATGGATTGGTGCCAATTGTGGAGCCAGAAATCTTGCTTGATGGGGAGCATAATATTCATAGAACTTTTGAAGTAGCCCAAAAGGTATGGGCAGAGGTGTTCTTCTACCTTGCTGAGAACAATGTCCTTTTTGAGGGTATTCTCCTGAAGCCTAGCATGGTTACACCTGGAGCTGAATCAAAGGAGAAGGCAAGTCCTCAAACAGTAGCTGATTACACCCTCAAGCTCCTTCACAGGAGAATCCCCCCTGCAGTCCCTGGAATTATGTTTTTGTCTGGTGGACAGTCTGAGGTTGAAGCTACCCTGAATTTGAATGCCATGAACCAATCTCCAAACCCATGGCACGTGTCATTCTCATATGCCAGAGCCCTTCAAAACACTGCCTTGAAGACATGGGGAGGGCGCCCAGAGAATGTGAAGGCGTCACAAGATGCACTCCTTTTCCGTGCCAAGTCCAACTCACTGGCTCAGCTTGGAAAGTACACTGGTGAGGGTGAATCTGAAGAGGCCAAGAAGGAGTTGTTCGTCAAAGGTTACTCCTACTAA 1197 0.4962 MASASPSLLKSSLVLDKSEWVKGQSLRQPSASVVRCSPTNPSALTIRAGSYAEELVKTAKTVASPGRGILAMDESNATCGKRLASIGLENTEANRQAYRTLLVTVPGLGQYISGAILFEETLYQSTIDGKKIVDVLIEQNIVPGIKVDKGLVPLVGSNDESWCQGLDGLASRSAAYYQQGARFAKWRTVVSIPNGPSALAVKEAAWGLARYAAISQDNGLVPIVEPEILLDGEHNIHRTFEVAQKVWAEVFFYLAENNVLFEGILLKPSMVTPGAESKEKASPQTVADYTLKLLHRRIPPAVPGIMFLSGGQSEVEATLNLNAMNQSPNPWHVSFSYARALQNTALKTWGGRPENVKASQDALLFRAKSNSLAQLGKYTGEGESEEAKKELFVKGYSY 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01542 398 FunFam Fructose-bisphosphate aldolase 36 397 - -
Vian5g01542 398 PANTHER FRUCTOSE-BISPHOSPHATE ALDOLASE 49 398 IPR000741 GO:0004332|GO:0006096
Vian5g01542 398 SUPERFAMILY Aldolase 45 398 - -
Vian5g01542 398 ProSitePatterns Fructose-bisphosphate aldolase class-I active site. 259 269 IPR029768 -
Vian5g01542 398 NCBIfam fructose-bisphosphate aldolase class I 54 374 - -
Vian5g01542 398 Gene3D Aldolase class I 34 397 IPR013785 -
Vian5g01542 398 Pfam Fructose-bisphosphate aldolase class-I 54 398 IPR000741 GO:0004332|GO:0006096
Vian5g01542 398 CDD FBP_aldolase_I_a 52 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01542 Vian-Chr5 37995377 37997894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01542 51 398 Miscellaneous Gene Families AT3G52930 55.398 1.11e-134 388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01542 K01623 - gmx:100775844 746.503
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01542 5 37995377 37997894 Vian5g01542 5 37995377 37997894 ECH