Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01541 ATGGCTTTCAATCTCACACACTCTACTTCCATTTCACACCATTTTTATGTTCATTCTCTTTCAAAGCCTTTTTTTCTTTCACACTCCAAAATCTCAACCTCTCCAATCTCCAAAACCCTTTGTCTTTGTGCATCACCATCCAACACCATCCACCCTTCACCAACCCCCATTTTCCTCCCATATCTCCAACAAGAACAAGAACCAGAAGAACAAGAGCTCATAGAAACAATAGAAGAAGAAGAAGAAGTAGTAGTAGAAGAAGCTCGTGACCCAGATGATCCAATCTACAAATTCTTCAAAACCCGCACTAGGATTTCCTTCCAAGACCCGGGAAAAGAAGGAAAGTTGTCGCTTCAGAAGAACCGTCGCATATCATGGCACCTTGCTTCTGACACCAGTGACCTTGTTGAAGAAGAATCTGGTTTGCCGTTACCTGAGGGGATTGTGGGGGAGATTGTTCAGCTTGCAAGGAACTTGCCTCAGAATATTACTCTGGAAGAGGGTTTGGTTGAATACGAAGGAAGGGTTAGTGAGAAAGATTGTTGGGAGGTTTTGAAATCACTTGGGGTGGAACACCTTCTGGTGTCTTGTTTGTATTTTTTTCAGTGGATGAGGTCGCAGGAACCTTCACTGGTTACACCTCGGGCTTGCACTGTGTTGTTTCCTTTGTTGGGGAAGGCGAGGATGGCTGATAAGTTGATGGTTTTGTTCTCAAACTTACCATCCACCAAGGAGTTCCGAGATGCTCATGTTTACAATGCCGCGATTTCAGGCCTTCTTTCTAGTGGCAGGTACGAAGATGCTTGGAAAGTGTACGAGTCAATGGAAGCGGATAATGTTCTTCCTGATCACGTGACATGTTCTATTATGGTTATTGTTATGAGAAAACTTGGCCACAGTGCAAAAGATGCATGGCAATTTTTTGAAAAAATGAATGGAAAGGGAGTCAAATGGGGTGAAGAAGTCCTAGGTGCACTCATAAAGTCTTTTTGTGTTGAGGGTTTGATGAGGGAAGCTCTCATCATCCTATCTGAAATGGAGAAGAAAGGGGTTTCCCCAAATGCTATTATGTACAACACCCTGATGGATGCATATTGTAAATCCAACCGTGTAGAAGAAGCTGAAGGCCTTTTTGTTGAGATGAAAGCTAAAGGGATTAAGCCCACTGAAGCTACGTTCAACATTCTAATGTATGGATACAGCAGAAAAATGCAGCCTGAGATCGTGGAGAACCTGATTGCTGAAATGCTGGATGTGGGGTTGAAACCAAATGCCAAATCATATACTTGTCTTGTCAGTGCGTATGGGAAGCAGAAAAGGATGAGTGACATGGCTGCAGATACATTCTTGAAGATGAGGAAAGATGGTATTAAACCCACTTCACATTCTTACACAGCTCTTATCCATGCATATTCAGTTAGTGGCTGGCATGAGAAAGCTTATGCAGCATTTGAAAACATGCAAAGGGAAGGTGTTAAACCATCCATAGAAACCTACACTGCATTACTAGATGCATTTAGACGAGCTGGTGATACTGAAACATTAATGAAAATATGGAAGTTGATGAGGAGGGAGAAAGTTGAAGGAACACGAGTGACATTCAATACTCTTGTTGATGGTTTTGCTAAACATGGTCACTACAAGGAAGCAAGAGATGTAATATCTCAATTTGGGAAAGTTGGACTGCATCCAACATTGTTGACGTACAATATGCTGATGAATGCATATGCACGAGGAGGGCGACACTCAAAGCTGCCAGAATTGTTGGAAGAGATGGCAGATCGTAACTTAAAGCCAGATTCAGTAACTTACTCAACTATCATATATGCATTTCTCCGCGTTCGAGATTTTTCACAGGCATTCTTTTATCACCAGGAGATGGTCAAGAAGGGTCTGGTAATGGATGCCAATTCTTACCAGAGACTTCGGGCGATTCTGGATGATAAAGCTTCAAGAAAAAACAGAACGGATAGGAGATCCTTGATTGGTGTAGTTAGAAATAAGATGGGTATTGTGAAACCTAAGAGGAAAAAGGACGAGTTATGGAAGTACAGGAAAAGACATGTTAAAAACAGTGATTCTATTCCTTCTCGTGAACATTTAGACGTGATTCTTGAAGACTTACCAGAAGAGTACGGTCTTATATTCTCCATTGTTGAAAGCAATCTTGATCTCTTCCAATGA 2184 0.4176 MAFNLTHSTSISHHFYVHSLSKPFFLSHSKISTSPISKTLCLCASPSNTIHPSPTPIFLPYLQQEQEPEEQELIETIEEEEEVVVEEARDPDDPIYKFFKTRTRISFQDPGKEGKLSLQKNRRISWHLASDTSDLVEEESGLPLPEGIVGEIVQLARNLPQNITLEEGLVEYEGRVSEKDCWEVLKSLGVEHLLVSCLYFFQWMRSQEPSLVTPRACTVLFPLLGKARMADKLMVLFSNLPSTKEFRDAHVYNAAISGLLSSGRYEDAWKVYESMEADNVLPDHVTCSIMVIVMRKLGHSAKDAWQFFEKMNGKGVKWGEEVLGALIKSFCVEGLMREALIILSEMEKKGVSPNAIMYNTLMDAYCKSNRVEEAEGLFVEMKAKGIKPTEATFNILMYGYSRKMQPEIVENLIAEMLDVGLKPNAKSYTCLVSAYGKQKRMSDMAADTFLKMRKDGIKPTSHSYTALIHAYSVSGWHEKAYAAFENMQREGVKPSIETYTALLDAFRRAGDTETLMKIWKLMRREKVEGTRVTFNTLVDGFAKHGHYKEARDVISQFGKVGLHPTLLTYNMLMNAYARGGRHSKLPELLEEMADRNLKPDSVTYSTIIYAFLRVRDFSQAFFYHQEMVKKGLVMDANSYQRLRAILDDKASRKNRTDRRSLIGVVRNKMGIVKPKRKKDELWKYRKRHVKNSDSIPSREHLDVILEDLPEEYGLIFSIVESNLDLFQ 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01541 727 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 424 459 IPR002885 -
Vian5g01541 727 Pfam Pentatricopeptide repeat domain 412 471 IPR002885 -
Vian5g01541 727 Pfam Pentatricopeptide repeat domain 484 539 IPR002885 -
Vian5g01541 727 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 530 564 IPR002885 -
Vian5g01541 727 Gene3D Tetratricopeptide repeat domain 557 632 IPR011990 GO:0005515
Vian5g01541 727 Gene3D Tetratricopeptide repeat domain 149 308 IPR011990 GO:0005515
Vian5g01541 727 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 248 282 IPR002885 -
Vian5g01541 727 Gene3D Tetratricopeptide repeat domain 309 442 IPR011990 GO:0005515
Vian5g01541 727 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 319 353 IPR002885 -
Vian5g01541 727 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 411 640 - -
Vian5g01541 727 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 600 634 IPR002885 -
Vian5g01541 727 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 389 423 IPR002885 -
Vian5g01541 727 Pfam PPR repeat 325 351 IPR002885 -
Vian5g01541 727 NCBIfam pentatricopeptide repeat 532 565 IPR002885 -
Vian5g01541 727 NCBIfam pentatricopeptide repeat 325 355 IPR002885 -
Vian5g01541 727 NCBIfam pentatricopeptide repeat 568 601 IPR002885 -
Vian5g01541 727 NCBIfam pentatricopeptide repeat 251 283 IPR002885 -
Vian5g01541 727 NCBIfam pentatricopeptide repeat 427 460 IPR002885 -
Vian5g01541 727 NCBIfam pentatricopeptide repeat 462 495 IPR002885 -
Vian5g01541 727 NCBIfam pentatricopeptide repeat 498 528 IPR002885 -
Vian5g01541 727 NCBIfam pentatricopeptide repeat 602 636 IPR002885 -
Vian5g01541 727 NCBIfam pentatricopeptide repeat 392 425 IPR002885 -
Vian5g01541 727 NCBIfam pentatricopeptide repeat 356 390 IPR002885 -
Vian5g01541 727 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 565 599 IPR002885 -
Vian5g01541 727 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 354 388 IPR002885 -
Vian5g01541 727 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 460 494 IPR002885 -
Vian5g01541 727 Gene3D Tetratricopeptide repeat domain 443 556 IPR011990 GO:0005515
Vian5g01541 727 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 495 529 IPR002885 -
Vian5g01541 727 Pfam PPR repeat family 248 291 IPR002885 -
Vian5g01541 727 Pfam PPR repeat family 565 611 IPR002885 -
Vian5g01541 727 Pfam PPR repeat family 353 401 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01541 Vian-Chr5 37987749 37992798 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01541 224 642 Glycosyltransferase AT1G05670 26.429 3.94e-47 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01541 - - gmx:100775643 1154.04