Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01539 ATGAGAAAAATGAAGGCGTGGAGGAGGCTGTTCTATGTTGCGGTGTTTGAGGCGGCGTTGATCGGAATGGGAAGCGGCCATGACTATTGGGAGGCATTGTCGAAGGCCATTATGTTCTTCGAGGGACAGCGATCGGGATTCCTGCCGCAGGATCAGAGACTGAGTTGGCGACAGAACTCCGGTCTCAGTGACGGCTGGAACTACAACATGGATCTCACCGGCGGTTACTACGACGCCGGCGACAACGTGAAATTCGGGTTTCCGATGGCCTTCACCACCACAATGCTGGCCTGGAGCGTGCTGGAATTCGGAGACGTCATGCCTCCCAATGAGCTCAGGAACGCCCTCGTCGCAGTTCGTTGGGCCACTGATTATCTTCTCAAGACTCTTTCGCAGCCCAATCGGATTTTCGTTCAGGTGGGTGATCCAAACTCAGATCACGATTGTTGGGAGAGGCCGGAGGACATGGATACAGCGAGGACTACGTATGCTATTGACGCACCAAACGCCGCTTCCGATGTCGCCGGCGAAACTGCCGCCGCACTAGCAGCGTCATCCATGGCGTTCCGATCATCAGACCCCGGTTACTCACAGACATTGCTTCGAAATGCTATTGCTGCCTTTGAATTTGCAGATAACTACAGGGGTGCTTACAGTGACCATGAAAATGTCAAGTATAATGCCTGCCCGTATTACTGTGATTTTAATGGCTATCAGGATGAGCTGTTATGGGGAGCTGCATGGCTAAGGAGAGCCACGCAGGACGATAATTTCCTGAACTATATTCAAAGCAATGGCAAAACTCTTGGTGCAGATGACACCATCAATGAGTTTGGTTGGGACAACAAGCATGCTGGCCTCAACGTCCTTCTCTCCAAGGAAGTTATAGAAGGAAACATGTACTCTCTTGAGTCCTACAAGTCTTCAGCAGAGAGCTTCATTTGTACAGTGATACCTGAATCACCAAGCTCAACCATGGAGTACACACCTGGTGGACTTGTGTACAGACCCGGAGGCAGCAACTTGCAACATGCAACTTCAATTGCTTTCCTTGAACTGGTATATGCCAATTACCTAACACACACTTCAGAAGCCATCACTTGTGGCAATGTCTATGTCAGTGCACAAACTCTTCGCCAACATGCTAAGAGACAAGTTGATTACATTTTGGGTGATAACCCAATGGGACTATCCTACATGGTTGGCTATAGCAACTACTATCCTCAACGTATTCATCATCGTGCCTCTTCTTTGCCTTCCATCAAGGATCATCCCCAGTTCATTGCATGCAAAGAAGGTTCAATCTACTACAACTCAACAAATCCCAATCCTAATGTACTCGTTGGTGCCATTGTTGGAGGACCTGACGAAAATGATGATTATCTGGATGATCGATCTGATTTTAGGCAATCTGAACCTACCACGTACATTAATGCACCTTTTGTTGGAGTGTTAGCATATTTTGCTGCAAATCCCAGCTTTAGTTGA 1488 0.4819 MRKMKAWRRLFYVAVFEAALIGMGSGHDYWEALSKAIMFFEGQRSGFLPQDQRLSWRQNSGLSDGWNYNMDLTGGYYDAGDNVKFGFPMAFTTTMLAWSVLEFGDVMPPNELRNALVAVRWATDYLLKTLSQPNRIFVQVGDPNSDHDCWERPEDMDTARTTYAIDAPNAASDVAGETAAALAASSMAFRSSDPGYSQTLLRNAIAAFEFADNYRGAYSDHENVKYNACPYYCDFNGYQDELLWGAAWLRRATQDDNFLNYIQSNGKTLGADDTINEFGWDNKHAGLNVLLSKEVIEGNMYSLESYKSSAESFICTVIPESPSSTMEYTPGGLVYRPGGSNLQHATSIAFLELVYANYLTHTSEAITCGNVYVSAQTLRQHAKRQVDYILGDNPMGLSYMVGYSNYYPQRIHHRASSLPSIKDHPQFIACKEGSIYYNSTNPNPNVLVGAIVGGPDENDDYLDDRSDFRQSEPTTYINAPFVGVLAYFAANPSFS 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01539 495 PANTHER ENDO-1,4-BETA-GLUCANASE 18 489 - -
Vian5g01539 495 FunFam Endoglucanase 25 493 - -
Vian5g01539 495 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 388 414 IPR018221 -
Vian5g01539 495 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 461 479 IPR033126 -
Vian5g01539 495 SUPERFAMILY Six-hairpin glycosidases 15 490 IPR008928 GO:0005975
Vian5g01539 495 Gene3D - 26 491 IPR012341 GO:0005975
Vian5g01539 495 Pfam Glycosyl hydrolase family 9 29 485 IPR001701 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01539 Vian-Chr5 37977094 37981659 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01539 25 491 Glycoside Hydrolase AT1G70710 61.242 0.0 603
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01539 K01179 - gmx:100101849 932.169