Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01535 ATGGATGCTATCAGAAAGCAAGCGTCCAAGCTTCGAGAACAAGTCGCTCGCCAGCAACAGGCTGTTCTGAAGCAATTTGGGGGTGGTGGTTATGGAGGTTCAGATAATGTGGTTACCAATGGAGTGGAACTCCAGTTGCACCAGAAACTTGAGAAACTCTATATATCGACTCGTGCGGGGAAGCATTATCAAAGGGATATTGTTCGTGGTGTAGAAGGTTATATTGTTACTGGATCCAAGCAAGTGGAAATAGGAACAAAGTTGTCAGAAGATAGCAGGAAATATGGTGCAGAAAATACATGTACCAGTGGTAATACACTGAGTAGAGCTGCACTAAGTTTTGCGCAAGCACATGCTCAAACAGAGAAGGAGCGTGGAAACTTACTAAAAGCTCTTGGTACACAGGTTGCGGAGCCCTTAAGGGCAATGGTGGTGGGAGCTCCATTGGAGGATGCACGGCATCTTGCTCAACGTTATGACAGAATGCGGCAAGAAGCTGAAGCCCAGGCTATTGAAGTTTCTAAACGTCAGGCAAAAGTAAGAGAAATGCCACCTAGTGCTGAGAATTCTATGAAATTAGATGCAGCTGAAGCAAAGCTGCAAGATCTGAAGACAAACATGACCATACTGGGGAAGGAAGCAGCTGCAGCATTGGCTGCTGTTGAAGCACAGCAACAGAGGTTAACTCTTCAGCGTCTTATAGCTATGGTTGAAGCAGAGCGTGCCTATCATCAAACAGTCCTGCAAATACTTGATCAGCTTGAGGGGGAGATGATATCAGAACAACGACGAATTGAAACCCCTCCTATTCCTAGTCTGGATAACAGTATGCCACCACCTCCGTCGTATGAAGAAGTGAATGGTGTCTACGCATCTCAGGCACATAATGGAACAACAGATAGCATGGGTTACTTCTTAGGAGAGGTTTTATTTCCATATTCTGCTGTATCCGAAGTGGAGCTAAATCTATCAGTTGGTGATTACATTGTTGTTCGAAAGGTGACAAACAGCGGATGGGCCGAGGGCGAATGCAAAGGCAAGGCAGGTTGGTTTCCGTTTAGTTACATTGAAAGGAGGGAACGGGTTCTTGCAAGTAAGGTGGCTGAAGTGTTTTAA 1116 0.4552 MDAIRKQASKLREQVARQQQAVLKQFGGGGYGGSDNVVTNGVELQLHQKLEKLYISTRAGKHYQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGAENTCTSGNTLSRAALSFAQAHAQTEKERGNLLKALGTQVAEPLRAMVVGAPLEDARHLAQRYDRMRQEAEAQAIEVSKRQAKVREMPPSAENSMKLDAAEAKLQDLKTNMTILGKEAAAALAAVEAQQQRLTLQRLIAMVEAERAYHQTVLQILDQLEGEMISEQRRIETPPIPSLDNSMPPPPSYEEVNGVYASQAHNGTTDSMGYFLGEVLFPYSAVSEVELNLSVGDYIVVRKVTNSGWAEGECKGKAGWFPFSYIERRERVLASKVAEVF 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01535 371 Pfam Variant SH3 domain 309 357 IPR001452 GO:0005515
Vian5g01535 371 Coils Coil 1 21 - -
Vian5g01535 371 SMART SH3_2 305 360 IPR001452 GO:0005515
Vian5g01535 371 Coils Coil 220 240 - -
Vian5g01535 371 Gene3D Arfaptin homology (AH) domain/BAR domain 45 267 IPR027267 -
Vian5g01535 371 Coils Coil 186 213 - -
Vian5g01535 371 Gene3D SH3 Domains 292 369 - -
Vian5g01535 371 PANTHER SH3 DOMAIN-CONTAINING 16 359 - -
Vian5g01535 371 SUPERFAMILY SH3-domain 267 359 IPR036028 GO:0005515
Vian5g01535 371 SUPERFAMILY BAR/IMD domain-like 45 258 IPR027267 -
Vian5g01535 371 ProSiteProfiles Src homology 3 (SH3) domain profile. 302 361 IPR001452 GO:0005515
Vian5g01535 371 Coils Coil 149 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01535 Vian-Chr5 37947224 37950636 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01535 - - gmx:100777051 680.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01535 5 37947224 37950636 Vian5g01535 5 37947224 37950636 ECH