Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01534 ATGGGGAGTTTGGGATCGATTCTGAAGCATCCAGATGACTTTTACCCGTTGCTGAAGCTCAAAATGGCGGCCAGAAACGCCGAGAAGCAGATCCCGCCGGAGCCGCACTGGGCGTTCTGTTATACTATGCTCCACAAGGTTTCTAGAAGCTTCGCGCTCGTCATTCAGCAACTCGATACCGACCTTCGCAACGCGGTTTGCATATTCTATCTGGTTCTTCGAGCGCTCGACACCGTTGGTTTGTATTCGTATCTTCGATTTGATGCGCGCGCTTTTTGTTGCTTTGTTTTTTGTAGCTTGCGAGGACGAATGAGTGTTAGTACTATCGGTTTCGAGGATGATACTAGCATAGCTACAGATGTCAAGGTGCCAATACTGATAGCCTTTCACCGTCATATTTATGATCGCGATTGGCACTTTTCATGTGGCACAAAGGAGTACAAAGTTCTAATGGACCAGATTCGTCATGTTTCAACTGCTTTTCTGGAACTTGGAAAGAACTATCAGGAAGCAATTGAGGTCATTACAAAAAGAATGGGTGCTGGAATGGCCAAATTTATTTGCAAGGAGGTTGAAACAATCGAGGACTATGATGAATATTGTCACTACGTGGCTGGACTTGTTGGGCTGGGTTTATCAAAGCTCTTCCATGCCTCTGGTTCAGAAGATCTGGCTTCAGATTCCCTTTCCAATTCAATGGGCCTGTTTCTTCAGAAAATAAACATCATTCGAGATTATTTGGAAGACATCAATGAAATCCCCAAGTCACGCATGTTCTGGCCACGACAGATTTGGAGTAAATATGTTAACAAACTCGAGGATTTGAAATATGAGGAGAACTCTGTTAAGGCAGTACAATGCTTAAATGACATGATTACTAATGCTCTGATTCATGCTGAAGATTGCTTAATATACATGGCTGCTTTAAAGGACCTGGCTATATTTCGCTTTTGTGCTATACCCCAGATAATGGCAATTGGAACACTCGCATTATGTTACAACAACATTGAGGTCTTCAGAGGTGTAGTTAAAATGAGGCGAGGTTTAACTGCCAAGGTGATTGACCGAACAAAGACTATGGCTGATGTCTATGGCGCTTTCTTTGATTTTGCTTGTGTGTTGGAGTCCAAGGTTGACAAAAATGATCCCAATGCAACAAAAACACTGAGTAGGCTGGTAGCTATTCAGAAAACTTGCAGAGAATCTGGTTTCTTGAGTAAAAGAAAATCGTACATTGTGAAGGATGAAAGTGGATACGGCTCCACCATGATTGTCATCCTGGTCATCCTGGTTTCCATCATTTTTGCTTATCTGTCTGCTAACCACCATAATAACTAG 1338 0.4275 MGSLGSILKHPDDFYPLLKLKMAARNAEKQIPPEPHWAFCYTMLHKVSRSFALVIQQLDTDLRNAVCIFYLVLRALDTVGLYSYLRFDARAFCCFVFCSLRGRMSVSTIGFEDDTSIATDVKVPILIAFHRHIYDRDWHFSCGTKEYKVLMDQIRHVSTAFLELGKNYQEAIEVITKRMGAGMAKFICKEVETIEDYDEYCHYVAGLVGLGLSKLFHASGSEDLASDSLSNSMGLFLQKINIIRDYLEDINEIPKSRMFWPRQIWSKYVNKLEDLKYEENSVKAVQCLNDMITNALIHAEDCLIYMAALKDLAIFRFCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAKVIDRTKTMADVYGAFFDFACVLESKVDKNDPNATKTLSRLVAIQKTCRESGFLSKRKSYIVKDESGYGSTMIVILVILVSIIFAYLSANHHNN 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01534 445 SUPERFAMILY Terpenoid synthases 36 79 IPR008949 -
Vian5g01534 445 CDD Trans_IPPS_HH 38 352 IPR033904 GO:0004311
Vian5g01534 445 Gene3D Farnesyl Diphosphate Synthase 34 402 IPR008949 -
Vian5g01534 445 ProSitePatterns Squalene and phytoene synthases signature 1. 200 215 IPR019845 GO:0016765
Vian5g01534 445 PANTHER FARNESYL-DIPHOSPHATE FARNESYLTRANSFERASE 94 437 IPR044844 GO:0004311
Vian5g01534 445 SUPERFAMILY Terpenoid synthases 112 399 IPR008949 -
Vian5g01534 445 NCBIfam squalene synthase 109 399 IPR006449 GO:0004310|GO:0008610
Vian5g01534 445 Pfam Squalene/phytoene synthase 45 347 IPR002060 GO:0009058
Vian5g01534 445 ProSitePatterns Squalene and phytoene synthases signature 2. 233 261 IPR019845 GO:0016765
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01534 K00801 - gmx:547940 755.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01534 5 37933377 37944027 Vian5g01534 5 37933377 37944027 ECH