Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01533 ATGGCATTCAAACTCAAATCACTACCTCTTCCTTACTCTCTTCACTCCTCTACCCGCCAAAACCCGAATTTCACGCTTTCGAACCATCGTCTTCCTCGTCGTTTCTCTGCACCTTCTCTTCCTCTCGGTATCTCTCTCTCAAGCACAGCTTCAGCATCCAGGTTTCATCGCACTGCCTTAGTAACCGCTCGCGCTGTTCGAAGTGATGAAATCGCCAACGAAGGCGAAGAAGACAAAGATGAAGAATTATCGAGGCAGGGTGTGAAAAAGGAGCTAGCAAATAAAGGAATATGGAGTCAGATGAAGGACATTGTGATGTTTACAGGTCCAGCAACCGGACTTTGGATATGTGCACCACTCATGAGTCTCATCGATACTGCAGTTATTGGTCAGAGAAGCTCCATTGAACTTGCTGCTCTAGGTCCTGCTACGGTTGTTTGTGATTACATGAGCTACGTGTTCATGTTTCTATCCATTGCTACTTCCAATATGGTTGCCACTGCCCTTGCTAAACAGGATAAAGAAGAAGTACAACACTACATATCTGTCTTGCTTTTTGTTGGGTTATCTTGTGGCATTGCGATGCTTTTGTTCACTAGGCTATTTGGTGCTGCAATAATAACTGCTTTCATCGGACCAAAGAATGCACACGTAGTACCTGCAGCTAGCAGTTATGTAAAGATTCGAGGCTTGGCATCACCTGCCTTACTTGTTGGATGGGTTGCTCAGAGTGCAAGTCTTGGTATGAAAGATTCCTGGGGACCCTTGAAAGCTTTGGCTGCTGCTAGTTTTATAAATATAAGTGGTTGTATAATTTTGTGCATCTATTTAGGCTACGGTATTGTAGGGGCAGCATGGGCTACAATGGTTTCACAAGTTATTGCTGCTTGCATGATGATTCACACTCTAAACATGAAGGGATATAATGCACTTGCTTTCTCCATTCCTTCAGGGAAGGAACTTTTGACGATATTTGGGCTTGCTGCTCCTGTATTTATGACAATGATGTCAAAGGTGGCTTTCTACTCACTACTTATATATTTTGCTACATCAATGGGTACACATACAATGGCTGCTCATCAAGTCATGGTCCAAACGTATTCCATGTGTACAGTATGGGGTGAACCTCTCTCTCAAACTGCTCAGTCATTTATGCCTGAACTGATATATGGAGTAAATCGGAGTTTATCAAAGGCCCGATTGCTTCTAAGGTCTCTTGTGATAATTGGAGTTATACTTGGCTTATTGTTAGGGATTGTTGGAACTTCAGTTCCTTGGTTATTTCCCTACATTTTTACACCTGATCGGATGGTCACCCAGGAGATGCATAAGGTGCTGATTCCATATTTTATAGCCCTTGCTGTAACACCCCCTACTATCAGCCTCGAGGGAACATTGCTGGCTGGGCGGGATCTGAGATTTATAAGTTTGTCAATGGTTGGATGCTTTTGCGTGGGTTCACTAGTATTATGGGCCTTGAGTAGTAGATTTGGCTTGCTAGGCTGCTGGTTTTCCCTGGCAATATTTCAATGGGCTCGGTTTTCAATGGCCCTCCAGCGCCTTCTTTCTCCCAACAGCGTTTTATACTCCGAAGATACAGACCGGTATGAGCTGCTAAAGCTAAAGACTGCCTAG 1635 0.4398 MAFKLKSLPLPYSLHSSTRQNPNFTLSNHRLPRRFSAPSLPLGISLSSTASASRFHRTALVTARAVRSDEIANEGEEDKDEELSRQGVKKELANKGIWSQMKDIVMFTGPATGLWICAPLMSLIDTAVIGQRSSIELAALGPATVVCDYMSYVFMFLSIATSNMVATALAKQDKEEVQHYISVLLFVGLSCGIAMLLFTRLFGAAIITAFIGPKNAHVVPAASSYVKIRGLASPALLVGWVAQSASLGMKDSWGPLKALAAASFINISGCIILCIYLGYGIVGAAWATMVSQVIAACMMIHTLNMKGYNALAFSIPSGKELLTIFGLAAPVFMTMMSKVAFYSLLIYFATSMGTHTMAAHQVMVQTYSMCTVWGEPLSQTAQSFMPELIYGVNRSLSKARLLLRSLVIIGVILGLLLGIVGTSVPWLFPYIFTPDRMVTQEMHKVLIPYFIALAVTPPTISLEGTLLAGRDLRFISLSMVGCFCVGSLVLWALSSRFGLLGCWFSLAIFQWARFSMALQRLLSPNSVLYSEDTDRYELLKLKTA 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01533 544 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 59 528 IPR044644 -
Vian5g01533 544 CDD MATE_DinF_like 100 514 IPR044644 -
Vian5g01533 544 Pfam MatE 116 271 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vian5g01533 544 NCBIfam MATE family efflux transporter 110 503 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01533 Vian-Chr5 37910351 37918304 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01533 K03327 - gmx:100778295 879.782
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01533 5 37910351 37918304 Vian5g01533 5 37910351 37918304 ECH