Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01516 ATGCTTGTGTTGTTTGAAACTCCTGCCGGGTTTGCCCTGTTTAAAGTTCTGGATGAAGGCAAGCTTTCAAAAGTTGAGGACTTGTGGAAGGACTTTTCCAGCGCAGACACTGCTAGACAGGTGGTCAAGTTGAAAGCGTTTTCTAAGTTCGAGAACACTTCAGAAGCTCTAGAAGCAGCGACTTTACTAATTGATGGAAAAGCAAGCAAAGGTCTTCGCAAGTTCTTGCGTGTTCATTGTGAAAATGAAACACTTGGTGTGGCCGATTCAAAACTTGGGAATGTGATTAAAGAGAAATTGAAAATCGATTGTATTCACAACAATGCAGTCATGGAGTTGATGAGAGGTGTCAGAAATCAGTTAACTGAACTCATATCTGGTCTAGCTGTTCAAGACATGGCTCCAATGAGCCTGGGTTTATCCCATAGCTTATCCAGATACAAGTTGAAGTTTAGCGCAGATAAGGTGGATACCATGATTGTGCAAGCTATTGGTTTACTTGATGATCTTGATAAAGAGTTGAATACATATGCCATGAGGGTTCGTGAATGGTATGGTTGGCATTTTCCCGAACTTACTAAAATAGTACAAGATAACATCCAATATGCAAGGGCAGTCAAGTTGATGGGTGATCGTGTCAATGCAGCTGAGCTTGATTTCTCTGAGATTTTGTCTGAGGAAGTGGAGGCAGAACTTAAGGAGGCAGCTGTAATATCTATGGGAACTGAAATCGGTGATCTTGATTTGGCAAATATTAGGGAACTCTGTGACCAGGTTTTGGCTCTTTCGGAATACAGGGCACAACTATATGATTATCTGAAGAGCAGGATGAACACCATTGCACCCAATTTGACTGCGATGGTTGGGGAGCTTGTTGGTGCTCGTCTCATTGCCCATGGTGGTAGCTTATTAAATCTTGCAAAGCAGCCTGGTAGCACTGTGCAGATTCTTGGTGCTGAGAAGGCTCTCTTCAGGGCACTGAAGACTAAGCATGCTACTCCGAAGTATGGTCTTATATACCATGCATCTTTGATTGGTCAGGCAGCTGCAAAGTTCAAGGGGAAAATTTCTCGGTCACTTGCTGCAAAGACAGCATTGGCTATTAGGTGTGACGCACTTGGAGATGGCCAAGACAACACCATGGGATTGGAGAACAGAGCCAAGCTTGAGGCGCGATTGAGGAACCTTGAAGGGAAAGAGTTGGGTCGTTTTGCCGGTTCTGCTAAGGGAAAACCTAAGATAGAAGCATATGACAAGGACAGAAAGAAAGGAGCGGGAGGACTGATCACCCCGGCTAAGACATATAATGCTTCGGCTGATTCAGTTATCGGGCAAATTGTCAATTCCGCCATGGATGAGGATAAACAAGAGGCTTCTGTTGCTGATAAAAAGAAAGAAAAGAAGAAAAAGAAGGGGAAAAATGAAGAGGAACCAACTGTTCAAGCTGATGTTGCTGAGGAGCCAGAACCCGAAGTTGAGAAGAAAGAAAAGAAGAAGAAAAGGAAGGAGGCTAGTGAGAATACTGAGTTGCAGAATGGGAATGGAGACATGAATGCAGGAGAGAAGAAGAAAAAACGGAAAAAGCATGCAGAGCAAGAAGAATCTCCTGAAATGCCAAGCAAGAAGAAAGGGAAAAAAAAGAAAACTGAAAACTAA 1656 0.433 MLVLFETPAGFALFKVLDEGKLSKVEDLWKDFSSADTARQVVKLKAFSKFENTSEALEAATLLIDGKASKGLRKFLRVHCENETLGVADSKLGNVIKEKLKIDCIHNNAVMELMRGVRNQLTELISGLAVQDMAPMSLGLSHSLSRYKLKFSADKVDTMIVQAIGLLDDLDKELNTYAMRVREWYGWHFPELTKIVQDNIQYARAVKLMGDRVNAAELDFSEILSEEVEAELKEAAVISMGTEIGDLDLANIRELCDQVLALSEYRAQLYDYLKSRMNTIAPNLTAMVGELVGARLIAHGGSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIYHASLIGQAAAKFKGKISRSLAAKTALAIRCDALGDGQDNTMGLENRAKLEARLRNLEGKELGRFAGSAKGKPKIEAYDKDRKKGAGGLITPAKTYNASADSVIGQIVNSAMDEDKQEASVADKKKEKKKKKGKNEEEPTVQADVAEEPEPEVEKKEKKKKRKEASENTELQNGNGDMNAGEKKKKRKKHAEQEESPEMPSKKKGKKKKTEN 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01516 551 ProSiteProfiles Nop domain profile. 280 398 IPR002687 -
Vian5g01516 551 MobiDBLite consensus disorder prediction 450 551 - -
Vian5g01516 551 Pfam snoRNA binding domain, fibrillarin 166 394 IPR002687 -
Vian5g01516 551 FunFam Probable Nucleolar protein 58 129 283 - -
Vian5g01516 551 MobiDBLite consensus disorder prediction 518 551 - -
Vian5g01516 551 SMART NOSIC_2 159 211 IPR012976 -
Vian5g01516 551 FunFam Nucleolar protein 58 284 405 - -
Vian5g01516 551 Pfam NOP5NT (NUC127) domain 2 66 IPR012974 -
Vian5g01516 551 MobiDBLite consensus disorder prediction 455 480 - -
Vian5g01516 551 PANTHER NUCLEOLAR PROTEIN 5 NUCLEOLAR PROTEIN NOP5 NOP58 1 548 IPR045056 GO:0030515|GO:0031428|GO:0032040
Vian5g01516 551 Gene3D Nop domain 285 397 IPR042239 -
Vian5g01516 551 Gene3D - 129 284 - -
Vian5g01516 551 SUPERFAMILY Nop domain 153 397 IPR036070 -
Vian5g01516 551 MobiDBLite consensus disorder prediction 487 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01516 Vian-Chr5 37745869 37749466 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01516 K14565 - gmx:100775301 915.605