Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01514 ATGAATTCTCAAGGCGGTCTTCCAAGGATTCAATTTGACACTGGAAGCACTCCCTCATCTCAAAGATCAAGTGAAAAGATGGTTGTCCTTGCTGCATCCATTGTGAGCAAATCTGGAAAAGTGCTAGTTTCTAGACAGTTTGTGGACATGTCTCGTATCAGAATTGAGGGTCTTCTAGCAGCATTTCCCAAGTTGGTGCCTGAATATTCTTACTCCCTCGATGAAGAGGGTATTTGCGAACATGCATTTGAGTTGATTTTTGCATTTGATGAAGTCATCTCTCTTGGGCACAAGGAAAATGTGACTGTTGTACAAGTTAAGAACTACTGTGAGATGGAGAGTCATGAAGAGAAACTGCACAAACTTGTTATGCAGAGCAAAATCAATGAAACTAAGGATGTTATGAAGCGGAAAGCTAGTGAGATTGATAAAAGCAAGGTTGAAAAGAACAAAGGGGATAAAGGGGGATTTGGTCCCTTACAGTCACTAGGCTCTGGAAAAATTGAAAATAGCCTTAGTGATTTGAGCATATCTAGCAGCGGAACTGCTTTTGGAAGTGGCTCTGGTCTCGGATTTAGTTCTGATGTTGATTCCTTTCCTACCAAGTCTAAAGGTCGTCCTACATCATCTGCTACTGCTCCACCAAAAGGTCTTGGAATGAAGCTTGGTAAATCCCAAAAGGCAAATCAGTTTTTGGAATCATTGAAAGCAGAAGGTGAGGTCTTTCTTGAAGATGTTCAGCCAAAACTTGGCCAGTCTCAGGCAGCTGCCCCACCACCTACGGATCCCATCACTTTAACTGTTGAAGAGAAACTAAATGCGACACTAAAGCGAGACGGTGGAATCGGTAATTTTGATGTTCAAGGCACAATGTCCCTCCAAATTCGCAGCAAAGAGGATGGACATATTCAAGTTCAGGTCCAGACTGGTGAGAATCAAGCCATTATTTTCAAGACACACCCCAACATGAATAAAGAATTATTTGCCAATGAAAATATACTAGGCCTAAAGGATCCCAATAGACCTTTCCCCACTGGTCAAACTGGTGGTTCTGAAGGTGTCGGTCTCTTAAAGTGGAGAATGCAAAGCACTGATGAATCAATGGTACCGCTGACAATCAACTGCTGGCCTACTACTTCTGGAAACAATACTTCTGTCAGCATCGAGTATGAGGCTTCTTCAATGTTTGATTTGCGGGATGTTTTGATTTCAGTACCTCTTCCATCTCTTCGGGAAGCACCATCTGTTAACCAGATTGATGGGGAATGGAGGTATGAGTCCAGGAATTCCCTTTTAGAGTGGTCTATCCTTCTGATTGATAATTCAAACCGCAGTGGATCAATGGAATTTGTTGTTCCGCAAGCTGATGCATCAGCATTCTTCCCCATTTACATTCATTTTATGGCAACAGATACATTTAGCAAACTGAAGGTCACCAACACCATACCGCTAAAGGGTGGTAATCCTCCTAAATTTTTTCAGCGGACACAGTTGATCACAGAAAACTACATGGTTGTGTGA 1521 0.4227 MNSQGGLPRIQFDTGSTPSSQRSSEKMVVLAASIVSKSGKVLVSRQFVDMSRIRIEGLLAAFPKLVPEYSYSLDEEGICEHAFELIFAFDEVISLGHKENVTVVQVKNYCEMESHEEKLHKLVMQSKINETKDVMKRKASEIDKSKVEKNKGDKGGFGPLQSLGSGKIENSLSDLSISSSGTAFGSGSGLGFSSDVDSFPTKSKGRPTSSATAPPKGLGMKLGKSQKANQFLESLKAEGEVFLEDVQPKLGQSQAAAPPPTDPITLTVEEKLNATLKRDGGIGNFDVQGTMSLQIRSKEDGHIQVQVQTGENQAIIFKTHPNMNKELFANENILGLKDPNRPFPTGQTGGSEGVGLLKWRMQSTDESMVPLTINCWPTTSGNNTSVSIEYEASSMFDLRDVLISVPLPSLREAPSVNQIDGEWRYESRNSLLEWSILLIDNSNRSGSMEFVVPQADASAFFPIYIHFMATDTFSKLKVTNTIPLKGGNPPKFFQRTQLITENYMVV 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01514 506 MobiDBLite consensus disorder prediction 134 153 - -
Vian5g01514 506 ProSiteProfiles Mu homology domain (MHD) profile. 261 506 IPR028565 -
Vian5g01514 506 PANTHER COATOMER SUBUNIT DELTA 27 66 IPR027059 GO:0006890|GO:0030126
Vian5g01514 506 CDD AP_delta-COPI_MHD 262 503 - -
Vian5g01514 506 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 261 503 IPR036168 -
Vian5g01514 506 MobiDBLite consensus disorder prediction 134 163 - -
Vian5g01514 506 Gene3D Mu homology domain, subdomain B 369 468 - -
Vian5g01514 506 FunFam Coatomer subunit delta 373 468 - -
Vian5g01514 506 Gene3D Mu homology domain, subdomain B 264 480 - -
Vian5g01514 506 MobiDBLite consensus disorder prediction 197 222 - -
Vian5g01514 506 MobiDBLite consensus disorder prediction 1 23 - -
Vian5g01514 506 Pfam Adaptor complexes medium subunit family 261 480 IPR028565 -
Vian5g01514 506 SUPERFAMILY SNARE-like 31 118 IPR011012 -
Vian5g01514 506 FunFam Coatomer subunit delta 264 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01514 Vian-Chr5 37728602 37734469 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01514 K20471 - gmx:100806837 786.178