Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01510 ATGCAGTTGAAGAAGTTTTTTTCTGCTTCACATTTTGCAATTTTTAGACAGAAGCAGAAAATAGTTGACACAGCATTGTTAGAGCCTCCTCCACGGAGGACTTACCAAGCAGTAGTGATTGCCACCAGAGACATGGGCATTTCTAAGGATGGAAAATTGCCCTGGACGTTACCCACTGATCTCAAATTTTTTGATGAGATCACAACTATAACGTCTGATCCGGGTAAGAAGAATGCTGTTGTGATGGGTAGAAAAACATGGGAGAGTATCCCTCCTGAGGATAGGCCTCTTCCTGGTCGCCTTAACGTTGTTCTGACTCGCTCGGGTAGCTTTGATATTGCAACTGCAGAGAATGTTATAATATGTGGAAGTGTGTCTTCTGCTATGGAACTGTTGGCTGCTTCTCCGTACTGCCTGTCAATTGAGAAAGTATTTCTTACAGGAGGTGGTGAGATATTCAGAGAGGCTCTTAATGTACCTGGATGCGAAGCTGCTCATATTACAGAAATTGAGGCAAGCATTGAGTGTGATACTTTTATGCCTCGAGTTGATGCCTTTCAATTTCAGTCATGGTATTCATCATTTCCTTTGGTGGAAGACAACCTCCGCTATTCTTTCAACACTTATGTGCGTGTAAGGAGTTCTCCGGCTGAGTCCCTACGTCAGAATGCTGATCCAGTTTTTGATAATGGTTCAGACTCTTTAAAATTCGAGGTCAATGAATTTTCTTTTCTTCCGAAGTTCATTTATGAGAGACATGAGGAATTTAAGTATCTAAGTTTGGTTCGAGAAATTATTTCTGAAGGCACAATTAAGGATGATAGGACAGGGACTGGTACCTTGTCGAAATTTGGCTGCCAGATGAGGTTTAATCTGCGCAGGAACTTTCCCCTTCTAACAACCAAGAAAGTATTTTGGCGAGGGGTTGTTGAGGAGCTTCTCTGGTTTATCAGCGGCTCAACAAGTGCCAAGTGGAGGCACTTTGGAGCCAAGTATACTGACATGCATGCTGACTACTCTGGCCAAGGATTTGACCAGCTTCTGGATGTTATTGACAAGATAAAGCATAACCCTGATGATCGACGCATCATTCTTTCAGCTTGGAATCCATCTGATCTTAAATTGATGACACTTCCCCCATGTCACATGTTTGCGCAGTTTTACGTAGCAAAGGGGGAATTATCGTGTCAAATGTATCAGCGATCTGCGGACATGGGCCTGGGGGTCCCATTTAATATTGCATCTTATGCTCTCCTGACATGCATGATTGCTCATGTTTGTGACCTTGTTCCGGGTGATTTTAGTCATGTTATCGGGGATGCACATGTTTACCGCAATCATGTGAGACCTCTTCAGGAACAGCTTCAGAATCAACCAAAACCTTTTCCGATTTTGAAGATAAACCCAAATAAGAAAGATATAGATTCCTTTGTTGCTACCGATTTCAAGCTCATAGGATATGACCCTCACAAGAAGATAGAAATGAAGATGGCTGTTTAA 1500 0.4247 MQLKKFFSASHFAIFRQKQKIVDTALLEPPPRRTYQAVVIATRDMGISKDGKLPWTLPTDLKFFDEITTITSDPGKKNAVVMGRKTWESIPPEDRPLPGRLNVVLTRSGSFDIATAENVIICGSVSSAMELLAASPYCLSIEKVFLTGGGEIFREALNVPGCEAAHITEIEASIECDTFMPRVDAFQFQSWYSSFPLVEDNLRYSFNTYVRVRSSPAESLRQNADPVFDNGSDSLKFEVNEFSFLPKFIYERHEEFKYLSLVREIISEGTIKDDRTGTGTLSKFGCQMRFNLRRNFPLLTTKKVFWRGVVEELLWFISGSTSAKWRHFGAKYTDMHADYSGQGFDQLLDVIDKIKHNPDDRRIILSAWNPSDLKLMTLPPCHMFAQFYVAKGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLVPGDFSHVIGDAHVYRNHVRPLQEQLQNQPKPFPILKINPNKKDIDSFVATDFKLIGYDPHKKIEMKMAV 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01510 499 FunFam thymidylate synthase isoform X2 322 499 - -
Vian5g01510 499 NCBIfam thymidylate synthase 329 499 IPR000398 GO:0004799|GO:0006231
Vian5g01510 499 PRINTS Dihydrofolate reductase signature 80 91 - -
Vian5g01510 499 PRINTS Dihydrofolate reductase signature 143 157 - -
Vian5g01510 499 PRINTS Dihydrofolate reductase signature 46 56 - -
Vian5g01510 499 PRINTS Dihydrofolate reductase signature 60 68 - -
Vian5g01510 499 CDD TS_Pyrimidine_HMase 258 452 IPR023451 -
Vian5g01510 499 PANTHER THYMIDYLATE SYNTHASE 1 324 499 IPR045097 GO:0016741
Vian5g01510 499 SUPERFAMILY Thymidylate synthase/dCMP hydroxymethylase 244 499 IPR036926 -
Vian5g01510 499 Gene3D Thymidylate synthase/dCMP hydroxymethylase domain 325 499 IPR036926 -
Vian5g01510 499 Gene3D Dihydrofolate Reductase, subunit A 20 213 IPR024072 -
Vian5g01510 499 ProSitePatterns Thymidylate synthase active site. 361 389 IPR020940 GO:0004799|GO:0006231
Vian5g01510 499 SUPERFAMILY Dihydrofolate reductase-like 34 211 IPR024072 -
Vian5g01510 499 Pfam Dihydrofolate reductase 36 211 IPR001796 GO:0004146|GO:0046654
Vian5g01510 499 Pfam Thymidylate synthase 324 499 IPR023451 -
Vian5g01510 499 Pfam Thymidylate synthase 257 325 IPR023451 -
Vian5g01510 499 PIRSF DHFR-TS 17 324 IPR012262 GO:0004146|GO:0004799|GO:0006730
Vian5g01510 499 PIRSF DHFR-TS 323 499 IPR012262 GO:0004146|GO:0004799|GO:0006730
Vian5g01510 499 CDD DHFR 37 210 IPR001796 GO:0004146|GO:0046654
Vian5g01510 499 Hamap Thymidylate synthase [thyA]. 255 499 IPR000398 GO:0004799|GO:0006231
Vian5g01510 499 Gene3D Thymidylate synthase/dCMP hydroxymethylase domain 249 324 IPR036926 -
Vian5g01510 499 ProSiteProfiles Dihydrofolate reductase (DHFR) domain profile. 34 211 IPR001796 GO:0004146|GO:0046654
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01510 Vian-Chr5 37672849 37683561 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01510 K13998 - gmx:100786311 873.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01510 5 37672849 37683561 Vian5g01510 5 37672849 37683561 ECH