Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01509 ATGATGACTCCCAAATTTCAAAACGTAGTCTCCACGGCGGCGTCCGTGGCGGCCACCGTGATGCTCCTCCGCTCTTTCACCCGCAATTACATTCCCCCGGAGTTCCAAAACTACCTCCACTCAAAACTATCAAAACTCCTCTCCTCCTTCTCCACGGAACTCACCCTCGTTATCGACGAATTCGACGGGCTCACTACGAACCCGCTCTTCGCCGCGGCGCAGCTCTACCTCAAGCCGCAGGAGGCGCCGAACACGAAGCGCTTCCGCGCCACGATGCCTTCGAAATCGCGCCACGTGTCCCTTCTCATGGACGGCAACGACGAGATCACGGACTCCTTCAACGGCGTGCCGTTCCGGTGGAGGCTCGTGTCCCGACGCGGCAAATCGAATTTCGCGGTGCACTTCTTCGAGGTGCGGTTCCACAAGAAGCACCGGGAGATGGTTCTGTCGGAGTATTTTCCGCGCGTGATGAAGGAGGCGGAGGCGGCGCGTGAGCGGAGGAAGACGCCGAGGCTCTTCACGGTGAAGGGCAAGCGGTTTCGGAGGGGAGGGAGGAAGGAGTTGTGGCAGGGCGTGAATATTGAGCACCCTGCGACGTTTGCGACTGTGGCGATGGATTGGGAATTGAAGGAGATGATAATTAGGGATTTGGATAGGTTTGTGGAGAGGAAGGGTTTATATAAGAGTGTTGGGAAGGCGTGGAAGAGAGGGTACTTGCTTTCGGGTCCCCCTGGAACTGGGAAATCGAGTTTGATTGCTGCTATGGCTAATTATCTGAATTTCGATGTCTATGACTTGGAACTCACTGCTGTTAATGGAAATTCTGACCTTAGGAGTTTGTTGATTGCCACCAGCAACCGTTCCATTCTTGTTGTGGAAGACATTGATTGCTCCCTTCAATTGCAGGATAGGCTTGCAGAACCTAAATCATCACAACCCCATCGCTTCATCCCACGCCATTTTCACTCATTTCCAGCACCCCAGGTGACATTATCGGGGTTCCTGAATTTCATAGATGGGTTGTGGTCGAGTTGTGGGAATGAGAGGATCGTAGTGTTCACCACGAATCATAAGGAGAAATTGGACCCTGCTCTCTTGCGCCCTGGGCGTATGGATGTGCACATTGACATGACTTACTGCACCCCAGATGGGTTCAAAATGCTGGCTTCCAATTACCTTGGGATCACGGAGCACCCACTTTTTGTTCAAATTGAGAACTTGCTTGGGATGATCGATGTCGCTCCGGCGGAGGTAGGGGAGCAGTTTTTGCGGGACGAAGATCCGGATATTGCACTCAACAGCCTGATGGAGCTCCTTCTTGAGAAGAAACGAAATCATGAATTGCAGATAAAAGTACCTCTCACCGTTGAATGA 1374 0.5255 MMTPKFQNVVSTAASVAATVMLLRSFTRNYIPPEFQNYLHSKLSKLLSSFSTELTLVIDEFDGLTTNPLFAAAQLYLKPQEAPNTKRFRATMPSKSRHVSLLMDGNDEITDSFNGVPFRWRLVSRRGKSNFAVHFFEVRFHKKHREMVLSEYFPRVMKEAEAARERRKTPRLFTVKGKRFRRGGRKELWQGVNIEHPATFATVAMDWELKEMIIRDLDRFVERKGLYKSVGKAWKRGYLLSGPPGTGKSSLIAAMANYLNFDVYDLELTAVNGNSDLRSLLIATSNRSILVVEDIDCSLQLQDRLAEPKSSQPHRFIPRHFHSFPAPQVTLSGFLNFIDGLWSSCGNERIVVFTTNHKEKLDPALLRPGRMDVHIDMTYCTPDGFKMLASNYLGITEHPLFVQIENLLGMIDVAPAEVGEQFLRDEDPDIALNSLMELLLEKKRNHELQIKVPLTVE 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01509 457 PANTHER BCS1 AAA-TYPE ATPASE 11 445 - -
Vian5g01509 457 SMART AAA_5 234 381 IPR003593 GO:0016887
Vian5g01509 457 Gene3D - 376 445 - -
Vian5g01509 457 CDD RecA-like_BCS1 213 377 - -
Vian5g01509 457 Gene3D - 190 375 IPR027417 -
Vian5g01509 457 ProSitePatterns AAA-protein family signature. 349 367 IPR003960 GO:0005524|GO:0016887
Vian5g01509 457 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 417 IPR027417 -
Vian5g01509 457 Pfam Domain associated at C-terminal with AAA 31 123 IPR025753 -
Vian5g01509 457 Pfam ATPase family associated with various cellular activities (AAA) 239 377 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01509 Vian-Chr5 37668612 37670092 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01509 199 383 Miscellaneous Gene Families AT3G47060 31.606 8.41e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01509 K08900 - gmx:100789716 638.647