Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01501 ATGGGTAAAGCGAAGGGGAAGCACCGTTTGGATAAGTACTATCACTTGGCCAAAGAACACGGTTACAGGTCTCGAGCTTCATGGAAGCTGGTCCAGCTCAATTCCAAATACCAGTTCCTCGAGTCCGCACGCGCCGTCCTCGACCTCTGCGCCGCCCCCGGAGGCTGGATGCAGGTGGCGGTGCAGCGCGTCCCCGTAGACCACCTCGTCATCGGCGTGGACCTGGCGCCCATCGCCCCCATCCGCGGTGCAATCGCCATCCAGGAAGACATCACGAAAACAGAATGCAAGTCCCGCATCAAGAAGCTCATGAACCAGCACGGATGCCGCGCCTTTGACGTCATTCTGCACGACGGCTCTCCTAATGTCGGCGGAGCCTGGGCTCAGGAAGCCATGAGCCAGAACTCCCTCGTCATTGATGCTGTCAAATTAGCCACTCAGTTCTTGGCGCCCAAGGGTATCTTTGTCACCAAAATTTTCAGGTCGCAAGATTACAGCTCTGTGGTGTATTGCTTGAAGCAGTTGTTTGAGAAGGTTGAGGTGGATAAACCTGCGGCTAGTCGATCTGAATCTGCTGAGATATATGTTTTGGGGCTTAAGTACAAGGCACCTGCCAAGATTGATCCGCGACTTCTTGATGTGAAGCATCTTTTTCAGGGGTCTGTGGAACCGCAGCCTAAGGTGGTGGATGTACTTAGAGATACTAAGCAGAAAAGGCATCGTGACGGCTATGAAGATGGAAACACAACTTTAAGGAAGATATCTTCAGCTTCAAATTTCATTTGGTCAGATTCTCCTCTGGAGATCCTTGGTTCAGTCACTTCTATAACCTTTACTGATGCAGCTGATTTACCAATCAAGGATCATGATCTAACAACTGAAGAGGTCAAATCTCTATGCGATGATTTAAGGGTTTTAGGGAAGCAAGATTTCAAGCATCTTCTAAAGTGGAGGATTCACATTAGAAAAGCTCTTTCACCAACTCAGAAGCATGATCCTCCTACCACTAAAGAAGAGACTGGAAATGAGCAGAAGGTGGATGAAGAAGATAGATTACTCAATGAAATGGAGGAACTGACTAATGTGATGGACCGCAAGAAGAAACGTGCAAAAAAGCTTCTTGCTAAAAGAAGAGCCAAGGACAAGGCACGGAAAGCAACAGGGATGCAAATGGATGCAGTAGAAGATGGTTATGTAGATCAGGAGCTGTTTTCCCTTTCCTCTATAAAGGGTAAGAAAGATCTGGTAGCTGTTGACAATGAAGGTGACGAGGGTGAGGGTGAAGTAGAAGATAGTGAGAATGAAGAAATTCATCAAAGCCCAGAGCATTCATCCAGTGACTTGGAAGATTCTGATGAGGAACGGAAAAGATACAATGAACAAATGGAAGATTTGTTGGATAAAGCTTATGAGAAGTTTGTCATCAGAAAGGAAGGAAGTTCAAAGCAGCGTAAGCGAATTAAGAAATCCTATGAGGCAGATGCCCAACTTTTGGAGGGCGGTGAGGATGATGGTATTGTTGAATCCAAGTATGATTCCGATGAAGACAAGGGTGATCAAGAAGCAAATCCATTGATGGTGCCACTTAATGAAGGGGCAGAACCGACCCAAGAGGAGATAATGAAAAAGTGGTTTAGTCAGGATATATTTGCTGAAGCTGCAGAGGAAGGTGACTTTGAGAAGGATGAGAGTAAAGATGAAATGGATATAGATGATGAGCCTAAGGAGAAGACATCCGTTGCCAAAAAGGTCAAAGAAAATAAAACAGCTGCTCAAGCAGTGGTAGATCACCCTCAACCTCAAGCATCCAAGACAGTAGATGATTTTGAAATAGTTCCTGCGCCTGGCACTGATTCAAGTGATGATTCATCCTCTGATGAATCGGAGGAAGATGTTGAAACCAAAGCTGAGATACTGGCTTATGCAAAGAAGATGATGAGGAAAAAGCAACGGGAGCAGATATTGGATGATGCATATAACAAGTACATGTTTGATGACGAGGGATTGCCGAAGTGGTTTCTAGATGAAGAGAAGAAACACCGGCAACCAGTAAAGCCTCTTACGAAAGAGGAAATTGCTGCAATGAAAGCGCAATTTAAAGAAATTGATGCCCGGCCTGCAAAGAAGGTGGCGGAGGCCAAAGCACGGAAGAAGCGTGCTGCAATGAAGAAGCTTGAGAAGGTACGGAAGAAGGCGAATGCCATATCAGATCAGACAGAGATTTCTGATCGTTCGAAGAGGAAGCAAATTGAACAACTCTATAAAAAGGCTGTTCCGAAGAGGCCTAAAAAGGAATATGTAGTTGCAAAGAAAGGTGTACAAGTAAAGACTGGCAAAGGAAAAGTCCTTGTTGATCGAAGAATGAAGAAGGATGCTAGGAAACATGGAATGGGTAGGGCAGGAAAAGGAGGTTCCAAGGGGAAGAAGGGTAAGGCTTCGAAGGGCAAAGGAGCTTCGAAGGCCTCCTCTGCCAAAAAGGGAAAACAGAGGACTAAATGA 2499 0.4574 MGKAKGKHRLDKYYHLAKEHGYRSRASWKLVQLNSKYQFLESARAVLDLCAAPGGWMQVAVQRVPVDHLVIGVDLAPIAPIRGAIAIQEDITKTECKSRIKKLMNQHGCRAFDVILHDGSPNVGGAWAQEAMSQNSLVIDAVKLATQFLAPKGIFVTKIFRSQDYSSVVYCLKQLFEKVEVDKPAASRSESAEIYVLGLKYKAPAKIDPRLLDVKHLFQGSVEPQPKVVDVLRDTKQKRHRDGYEDGNTTLRKISSASNFIWSDSPLEILGSVTSITFTDAADLPIKDHDLTTEEVKSLCDDLRVLGKQDFKHLLKWRIHIRKALSPTQKHDPPTTKEETGNEQKVDEEDRLLNEMEELTNVMDRKKKRAKKLLAKRRAKDKARKATGMQMDAVEDGYVDQELFSLSSIKGKKDLVAVDNEGDEGEGEVEDSENEEIHQSPEHSSSDLEDSDEERKRYNEQMEDLLDKAYEKFVIRKEGSSKQRKRIKKSYEADAQLLEGGEDDGIVESKYDSDEDKGDQEANPLMVPLNEGAEPTQEEIMKKWFSQDIFAEAAEEGDFEKDESKDEMDIDDEPKEKTSVAKKVKENKTAAQAVVDHPQPQASKTVDDFEIVPAPGTDSSDDSSSDESEEDVETKAEILAYAKKMMRKKQREQILDDAYNKYMFDDEGLPKWFLDEEKKHRQPVKPLTKEEIAAMKAQFKEIDARPAKKVAEAKARKKRAAMKKLEKVRKKANAISDQTEISDRSKRKQIEQLYKKAVPKRPKKEYVVAKKGVQVKTGKGKVLVDRRMKKDARKHGMGRAGKGGSKGKKGKASKGKGASKASSAKKGKQRTK 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01501 832 Hamap Ribosomal RNA large subunit methyltransferase E [rlmE]. 6 202 IPR015507 GO:0001510|GO:0008168
Vian5g01501 832 MobiDBLite consensus disorder prediction 478 496 - -
Vian5g01501 832 MobiDBLite consensus disorder prediction 325 350 - -
Vian5g01501 832 FunFam AdoMet-dependent rRNA methyltransferase SPB1 19 208 - -
Vian5g01501 832 Pfam Spb1 C-terminal domain 605 795 IPR012920 GO:0005634|GO:0006364|GO:0008168
Vian5g01501 832 Coils Coil 708 738 - -
Vian5g01501 832 MobiDBLite consensus disorder prediction 478 634 - -
Vian5g01501 832 MobiDBLite consensus disorder prediction 713 832 - -
Vian5g01501 832 MobiDBLite consensus disorder prediction 415 462 - -
Vian5g01501 832 MobiDBLite consensus disorder prediction 332 350 - -
Vian5g01501 832 Coils Coil 448 468 - -
Vian5g01501 832 MobiDBLite consensus disorder prediction 553 567 - -
Vian5g01501 832 MobiDBLite consensus disorder prediction 727 770 - -
Vian5g01501 832 Hamap AdoMet-dependent rRNA methyltransferase <gene_name> [SPB1]. 1 802 IPR028589 GO:0008649|GO:0031167
Vian5g01501 832 Pfam Domain of unknown function (DUF3381) 235 384 IPR024576 -
Vian5g01501 832 MobiDBLite consensus disorder prediction 792 832 - -
Vian5g01501 832 MobiDBLite consensus disorder prediction 503 521 - -
Vian5g01501 832 MobiDBLite consensus disorder prediction 568 584 - -
Vian5g01501 832 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 21 202 IPR029063 -
Vian5g01501 832 MobiDBLite consensus disorder prediction 434 462 - -
Vian5g01501 832 Coils Coil 342 376 - -
Vian5g01501 832 PANTHER RIBOSOMAL RNA METHYLTRANSFERASE 5 342 - -
Vian5g01501 832 MobiDBLite consensus disorder prediction 366 383 - -
Vian5g01501 832 Gene3D Vaccinia Virus protein VP39 19 208 IPR029063 -
Vian5g01501 832 MobiDBLite consensus disorder prediction 365 388 - -
Vian5g01501 832 Pfam FtsJ-like methyltransferase 22 200 IPR002877 GO:0008168|GO:0032259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01501 K14857 - gmx:100790741 1331.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01501 5 37572503 37577518 Vian5g01501 5 37572503 37577518 ECH