Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01493 ATGGCGGAAGAAGCAGTTCTGGGCTATCTAGAGAAGAACGAGGAAATTACAGACTCGGGTGAGTTCGCAGCTGAACGCGGCATTGACCATAACGAGATCGTGAACGTGATTAAGAGCCTGCACGGTTTCAGATACGTGGATGCGCAAGACATTAAGAGAGAGGCATGGGTGCTAACTGATGAGGGTAAAACCTATGCCACTGTGGGATCACCGGAAGTTCAACTCTTTCTGGCCATTCCCCCGGAGGGTATCTCTAAAGAAGACCTTCAGAAAAAGTTGGATCCTTCGCTCTTCAAGATAGGTTGTGCCCAGGCTGCAAAGAACAAATGGGTGGATATGGGAAAACAATTGATTTCTAGAAAGGTTCAACATGTGGATGACAAGGTCAAAGATCTTCTTATTCAAATACAACAAGGGCGGAACATTGGTTCAGATGAGATCAAAGCACTCAAAGCAAGAAAGCTCATTGTCCCACAAACGTGGAAGGGTTACTCCTTGAAAAAAGGTCCAAATTATGCACCCAAAAGAAAGAAGGTCGTCACTGACCTGACTCGTGATAATTTTCAGAGTGGTGAGTGGAAGGAACTAGAGTTCAAGGAGTACAATTATAGTGCTAAAGGTCAGCCTCTTGAGGGTGGCAATCTTCATCCATTGCTGAAGGCAAGGAGATATATCCTGTTTGAGGAGATGCCAACAAATAATTTTGTTGAGAGCAGCTTCTGGAACTTTGATGCCCTGTTCCAGCCCCAACAACACCCAGCTCGTGATTCACATGATACGTTCTTTTTGGAAACTCCTTCAACAACAAAGGAATTGCCAGAAGATTATGTTCTGAGAGTGAAGCAAGTTCATGAATCTGGTGGTTATGGGTCTAGAGGATATACATATGACTGGAAGAGAGAGGAAGCAAATAAAAACCTCCTGCGAACCCATACAACTGCTGTTTCCTCCAGGATGCTTTACCAACTAGCACAGAAACCATTTGCCCCCAAAAAATATTTCTCTATCGATCGTGTATTCAGAAATGAAGCAGTTGATCGGACACATCTTGCGGAATTCCACCAAATAGAAGGTCTTGTATGTGATCGGGGACTCACTCTGTCCGACTTAATAGGAGTCCTGCATGATTTTTTCTCACGCTTAGGCATGACCAAACTGAAGTTCAAACCAGCTTACAATCCATACACTGAACCTAGCATGGAGATCTTTAGTTATCATGAAGGTTTTAAAAAATGGGTAGAGGTGGGAAACTCCGGCATGTTCAGACCTGAAATGTTGCAGCCGATGGGACTTCCTGAAGATGTCCAAGTTATTGCGTGGGGGCTTTCCCTTGAAAGGCCAACGATGATACTATACGGGATCGATAACATCAGAGATCTCTTCGGACACAAGGTGGATCTTGGGCTCATAAAGAAAAATCCTATATGTCGTCTTGGAATTGATTAA 1446 0.4398 MAEEAVLGYLEKNEEITDSGEFAAERGIDHNEIVNVIKSLHGFRYVDAQDIKREAWVLTDEGKTYATVGSPEVQLFLAIPPEGISKEDLQKKLDPSLFKIGCAQAAKNKWVDMGKQLISRKVQHVDDKVKDLLIQIQQGRNIGSDEIKALKARKLIVPQTWKGYSLKKGPNYAPKRKKVVTDLTRDNFQSGEWKELEFKEYNYSAKGQPLEGGNLHPLLKARRYILFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLETPSTTKELPEDYVLRVKQVHESGGYGSRGYTYDWKREEANKNLLRTHTTAVSSRMLYQLAQKPFAPKKYFSIDRVFRNEAVDRTHLAEFHQIEGLVCDRGLTLSDLIGVLHDFFSRLGMTKLKFKPAYNPYTEPSMEIFSYHEGFKKWVEVGNSGMFRPEMLQPMGLPEDVQVIAWGLSLERPTMILYGIDNIRDLFGHKVDLGLIKKNPICRLGID 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01493 481 Gene3D - 58 156 - -
Vian5g01493 481 Pfam PheRS DNA binding domain 3 70 125 IPR040725 -
Vian5g01493 481 PANTHER PHENYLALANYL-TRNA SYNTHETASE 50 470 - -
Vian5g01493 481 NCBIfam phenylalanine--tRNA ligase subunit alpha 171 472 IPR004529 GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432
Vian5g01493 481 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 263 474 IPR006195 -
Vian5g01493 481 FunFam Phenylalanine--tRNA ligase alpha subunit, cytoplasmic 71 125 - -
Vian5g01493 481 Pfam tRNA synthetases class II core domain (F) 201 467 IPR002319 GO:0000049|GO:0004812|GO:0005524|GO:0043039
Vian5g01493 481 Pfam PheRS DNA binding domain 1 3 52 IPR040724 -
Vian5g01493 481 SUPERFAMILY Class II aaRS and biotin synthetases 201 466 IPR045864 -
Vian5g01493 481 CDD PheRS_alpha_core 216 466 - -
Vian5g01493 481 Gene3D Bira Bifunctional Protein; Domain 2 216 480 IPR045864 -
Vian5g01493 481 Gene3D - 71 125 - -
Vian5g01493 481 FunFam Phenylalanine--tRNA ligase alpha subunit 216 480 - -
Vian5g01493 481 Gene3D - 7 199 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01493 K01889 - gmx:100792325 929.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01493 5 37467318 37472174 Vian5g01493 5 37467318 37472174 ECH