Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01485 ATGCCTTCCCGAAGAAGAACTCTCCTGAAGGTCATCATTCTCGGTGACAGTGGGTTCGTCTCTTCATCTTTTCCATTTCTAGGGGTGGGGAAGACGTCTTTGATGAACCAGTATCCTTCGTTTCTGTCTAGATACTCCTTGTTTATATATGTGAATAAGAAGTTTAGTAATCAGTACAAGGCAACCATTGGAGCGGATTTTTTGACAAAAGAAGTGCAATTCGAAGATAGGCTTTTCACCTTACAGATTTGGGATACAGCTGGCCAAGAAAGATTCCAAAGCCTTGGAGTTGCTTTCTATCGAGGTGCTGATTGTTGTGTTCTTGTATATGATGTTAATTCAATGAAATCATTTGACAACCTTAACAACTGGAGGGAGGAATTTCTGATTCAAGCAAGTCCTTCCGATCCCGAGAATTTTCCTTTTGTTGTCATAGGAAACAAAATAGATATTGATGGTGGGAACAGCAGAGTGGTGTCAGAAAAGAAGGCTCGGGCTTGGTGTGCATCAAAAGGAAATATTCCATATTTTGAGACATCTGCCAAAGAAGGCATTAATGTTGAAGAAGCATTCCAATGCATAGCAAAGAATGCCCTGAAAAGTGGAGAAGAAGAAGAATTATACCTGCCAGACACAATTGATGTTGGAAACAGCAGTCAGCCACGGGCAACAGGGTGCGAGTGCTGA 687 0.4163 MPSRRRTLLKVIILGDSGFVSSSFPFLGVGKTSLMNQYPSFLSRYSLFIYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPENFPFVVIGNKIDIDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEELYLPDTIDVGNSSQPRATGCEC 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01485 228 PANTHER RAB FAMILY 1 226 - -
Vian5g01485 228 FunFam Ras-related protein Rab7 1 211 - -
Vian5g01485 228 ProSiteProfiles small GTPase Ras family profile. 3 228 IPR001806 GO:0003924|GO:0005525
Vian5g01485 228 NCBIfam small GTP-binding protein domain 29 194 IPR005225 GO:0005525
Vian5g01485 228 Gene3D - 2 210 IPR027417 -
Vian5g01485 228 SMART rho_sub_3 11 201 IPR001806 GO:0003924|GO:0005525
Vian5g01485 228 SMART ras_sub_4 6 201 - -
Vian5g01485 228 CDD Rab7 9 204 - -
Vian5g01485 228 ProSiteProfiles small GTPase Rab1 family profile. 3 228 - -
Vian5g01485 228 SMART rab_sub_5 9 201 - -
Vian5g01485 228 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 203 IPR027417 -
Vian5g01485 228 PRINTS Transforming protein P21 ras signature 9 30 - -
Vian5g01485 228 PRINTS Transforming protein P21 ras signature 54 70 - -
Vian5g01485 228 PRINTS Transforming protein P21 ras signature 72 94 - -
Vian5g01485 228 PRINTS Transforming protein P21 ras signature 138 151 - -
Vian5g01485 228 PRINTS Transforming protein P21 ras signature 176 198 - -
Vian5g01485 228 ProSiteProfiles small GTPase Rho family profile. 2 202 - -
Vian5g01485 228 Pfam Ras family 28 199 IPR001806 GO:0003924|GO:0005525
Vian5g01485 228 SMART ran_sub_2 28 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01485 Vian-Chr5 37405398 37408330 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01485 K07897 - gmx:100305642 404.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01485 5 37405398 37408330 Vian5g01485 5 37405398 37408330 ECH