Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01480 ATGGTTCCTCAAGCTTTGTCAGTGCCCGCTAGCGCCAGCTTCACTATAGCTTCTCGCTCCAGAACTCCCTCCCACGTTGTATTTTCTCACAGAAACCCCTCTTCGGTAGCTTCTTCTTTTCCAAGCCCATATGGCAATTCATCAGAAGTTGGGTTGTCAAGTAAAATTGGGGGCTTTCCTTTAAAATTTGATGAGAAAAGTATCCATGGTGCAAGCACAAGTTATGGTGCAATTGAGGCCAGTAAGGGGAATCCATCAATAACACCAGCAGTGATGACTCCCGGAGGACCTATTGATCTGTCATCTGTTTTGTTCAGGAATCGTATAATATTCATAGGGCAGCCAGTCAATTCACAAGTGGCTCAAAGAGTTATATCACAGCTTGTGACTCTTGCTACTATTGATGAAAAATCAGATATACTGGTATATATAAATTGCCCCGGTGGAAGCACCTATTCAGTATTGGCAGTCTATGATTGCATGTCTTGGATTAAGCCCAAGGTTGGTACCGTTTGTTTTGGAGTAGCTGCAAGCCAAGGAGCACTTCTCCTTGCTGGAGGAGAGAAGGGAATGCGCTATGCGATGCCAAATGCTCGCATTATGATACATCAACCACAGAGTGGATGTGGGGGTCATGTTGAGGATGTCAGACGCCAAGTGAATGAAGCTGTTCAATCTCGCCATGTTAGTCTTTCTTCCTCTGATTTGCACCATTTTTTATTTTACAGTTCTTGGAATGCTATGCTCAATTCACTCATTCTATTTGGATTTCAGAAAATTGACAAGATGTATAGTGCTTTTACGGGGCAGCCATTAGAGACGGTGCAGCAGTACACAGAAAGGGACCGTTTTCTGTCTGTTTCTGAGGCTTTGGAGTTTGGTCTTATTGATGGTGTCCTGGAAACAGAGTATTGA 915 0.4372 MVPQALSVPASASFTIASRSRTPSHVVFSHRNPSSVASSFPSPYGNSSEVGLSSKIGGFPLKFDEKSIHGASTSYGAIEASKGNPSITPAVMTPGGPIDLSSVLFRNRIIFIGQPVNSQVAQRVISQLVTLATIDEKSDILVYINCPGGSTYSVLAVYDCMSWIKPKVGTVCFGVAASQGALLLAGGEKGMRYAMPNARIMIHQPQSGCGGHVEDVRRQVNEAVQSRHVSLSSSDLHHFLFYSSWNAMLNSLILFGFQKIDKMYSAFTGQPLETVQQYTERDRFLSVSEALEFGLIDGVLETEY 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01480 304 FunFam ATP-dependent Clp protease proteolytic subunit 79 234 - -
Vian5g01480 304 Pfam Clp protease 258 302 IPR023562 -
Vian5g01480 304 Pfam Clp protease 99 227 IPR023562 -
Vian5g01480 304 Coils Coil 297 304 - -
Vian5g01480 304 SUPERFAMILY ClpP/crotonase 98 302 IPR029045 -
Vian5g01480 304 CDD S14_ClpP_2 99 299 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vian5g01480 304 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 86 303 IPR023562 -
Vian5g01480 304 Gene3D - 78 304 - -
Vian5g01480 304 ProSitePatterns Endopeptidase Clp histidine active site. 192 205 IPR033135 -
Vian5g01480 304 PRINTS Clp protease catalytic subunit P signature 170 187 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vian5g01480 304 PRINTS Clp protease catalytic subunit P signature 191 210 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vian5g01480 304 PRINTS Clp protease catalytic subunit P signature 278 297 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vian5g01480 304 PRINTS Clp protease catalytic subunit P signature 99 114 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vian5g01480 304 PRINTS Clp protease catalytic subunit P signature 139 159 IPR001907 GO:0004176|GO:0004252|GO:0006508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01480 K01358 - gmx:100799710 478.018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01480 5 37359759 37362829 Vian5g01480 5 37359759 37362829 ECH