Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01477 ATGGCAGAGGGAAAGGGAGTTGAAACTCATAAAGCACTTGATGATTTCGATCCTCCCAAGAAGCCCAAAACAAACTTCTATGCTTTTGGCTGCGCTATATTGGCCTCCACTACATGCATTTTACTTGGTTATGTTACGATGGATGTTGTTATTGTTATAGATATTGGGGTGATGACCGGTGCAGCCATATACATAAAGAAGGACCTAAAGGTGTCGGATGTGCAAATAGAGATACTCTTGGGAATCATCAACCTCTACTCTCTCATAGGCTCATGCTTGGCCGGCAGAACCTCCGATTGGATAGGCCGCCGATACACCATTGTCTTCGCCGGCACCATCTTCTTCGCCGGGGCAATTCTCATGGGTTTCTCTCCCAACTATGCCTTTCTCATGTTCGGCCGTTTCGTGGCCGGCATCGGCATCGGCTACGCCCTCATGATCGGACCTGTCTACTCCGCCGAGGTCTCCCCAGCCTCCTATCGTGGCTTCCTCACTTCTTTCACCGATGCCTTTATCAATGGAGGGATATTACTGGGATACATATCCAACTTCGCATTTTCAAAGATGACATTGAAGTTGGGATGGCGAATGATGCTTGGGGTCGGTGCAATTCCTTCGGCACTCATAACATTGGGAGTGTTGGCGATGCCGGAATCTCCGCGGTGGCTGGTGATGAGGGGACGTTTGGGAGAGGCAACGAAAGTGCTTAACAAAACCTCCGACAGCAAGGAAGAAGCTCAACTGAGGCTGGCCGAGATCAAACAAGCCGCAGGGATACCGGAGAGTTGCAACGATGACGTCGTTGAAGTAACGAAACAAAGCACGGGTAAGGACGTGTGGAAAGAGTTGTTCCTTTATCCAACGCCTGCAGTTCGTCACATCGTAATTGCAGCGCTCGGGATTTACTGCTTCCAACAATCGTCGGGCGTGGACGCCATCGTTTTATACAGTCCAAGAATCTTCCAGAATGCTGGGATGACCGATGACACACATACGCTTCTTGCAACTGTGGCCGTTGGATTCGTGAAGACGTTGTTCATCGTGCTTTCTTCTTTAGTGTTGGACCGCGTGGGACGTCGTCCCATGTTGTTGTCTAGTGTCGGGGGCATGATGGTCTCGCTTCTCACTCTGGGAATAGCCTTTACCATCATTGAGCACTCTGAGAGTAAACCGATATGGGGCATTGGATTGAGCATAGCTATGGTGTTAGCCTTCGTGGCCACGTTTTCCATCGGTGCGGGACCCATCACGTGGGTATACAGCGCTGAGGTCTTTCCGTTGAGGTTGCGGGCGCAGGGTGTGGCTGCCGGCGTTGTGGTGAATAGAGTCAGTAGTGGGGTTGTTACAATGACCTTTTTGTCCCTCACTAAAGCCATCACTTTTGGTGGAACTTTCTTCCTCTATTCTGGTATTTCAGTGATCGGGTGGTTATTCTTCTACTTTGCGCTTCCCGAGACACGTGGTAAAACACTTGAAGAAATGGAAGGGTGTTTCGGTCATTTCCCAGCCAAATCTAACTCCAAATACAAGGGAGTAGAAAATGGAAATGGCAAAGTGCCACAAGTTCAGCTGGGGACCAATCTCAGCACTTAA 1593 0.4965 MAEGKGVETHKALDDFDPPKKPKTNFYAFGCAILASTTCILLGYVTMDVVIVIDIGVMTGAAIYIKKDLKVSDVQIEILLGIINLYSLIGSCLAGRTSDWIGRRYTIVFAGTIFFAGAILMGFSPNYAFLMFGRFVAGIGIGYALMIGPVYSAEVSPASYRGFLTSFTDAFINGGILLGYISNFAFSKMTLKLGWRMMLGVGAIPSALITLGVLAMPESPRWLVMRGRLGEATKVLNKTSDSKEEAQLRLAEIKQAAGIPESCNDDVVEVTKQSTGKDVWKELFLYPTPAVRHIVIAALGIYCFQQSSGVDAIVLYSPRIFQNAGMTDDTHTLLATVAVGFVKTLFIVLSSLVLDRVGRRPMLLSSVGGMMVSLLTLGIAFTIIEHSESKPIWGIGLSIAMVLAFVATFSIGAGPITWVYSAEVFPLRLRAQGVAAGVVVNRVSSGVVTMTFLSLTKAITFGGTFFLYSGISVIGWLFFYFALPETRGKTLEEMEGCFGHFPAKSNSKYKGVENGNGKVPQVQLGTNLST 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01477 530 ProSitePatterns Sugar transport proteins signature 2. 136 161 IPR005829 GO:0016020|GO:0022857|GO:0055085
Vian5g01477 530 NCBIfam sugar porter family MFS transporter 20 494 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vian5g01477 530 ProSitePatterns Sugar transport proteins signature 1. 94 111 IPR005829 GO:0016020|GO:0022857|GO:0055085
Vian5g01477 530 ProSiteProfiles Major facilitator superfamily (MFS) profile. 40 487 IPR020846 GO:0022857
Vian5g01477 530 Pfam Sugar (and other) transporter 64 496 IPR005828 GO:0016020|GO:0022857|GO:0055085
Vian5g01477 530 Coils Coil 236 256 - -
Vian5g01477 530 PANTHER SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER 23 498 IPR045262 GO:0015144
Vian5g01477 530 SUPERFAMILY MFS general substrate transporter 40 495 IPR036259 -
Vian5g01477 530 Gene3D MFS general substrate transporter like domains 23 500 IPR036259 -
Vian5g01477 530 ProSitePatterns Sugar transport proteins signature 1. 350 366 IPR005829 GO:0016020|GO:0022857|GO:0055085
Vian5g01477 530 PRINTS Sugar transporter signature 399 420 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vian5g01477 530 PRINTS Sugar transporter signature 422 434 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vian5g01477 530 PRINTS Sugar transporter signature 131 150 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vian5g01477 530 PRINTS Sugar transporter signature 305 315 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vian5g01477 530 FunFam probable polyol transporter 4 21 501 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01477 Vian-Chr5 37343677 37345581 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01477 18 527 Organic Solute Cotransporters AT3G18830 63.672 0.0 680
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01477 - - vun:114168664 971.459