Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01467 ATGATGCAAAAGGGGTTTGCTTTTCATTTGTTTCAACACACAGCTAATGTCTTTGTTCGCGGAATATGCGTTTGCGGCAGTGAGGCCATTGCGACCTCGTCGAGGGACCGGGCGGTTAGATTGTGGTCTCTGGACAGCAACCGCAAGTTCGTAAGTTCCAAGATTCTTTTGGGGCACACGAGCTTTGTGGGACCCTTGGCATGGATTCCCCCGAATTCGGAGTTTCCGCTTGGTGGGATTGTGTCTGGCGGCATGGACACTTTGGTCTTTGTCTGGGACTTGAACACTGGTGAGACGGTTCATACTCTCAAAGGCCATCAGTTGCAGGTCACTGGCATTGTGTTTGATGAAGGGGATGTTGTGTCCTCTTCTGTTGACTGTACCTTAAGGCGGTGGAGAAATGGGCAAACTGTAGAGACGTGGGAAGCTCACAAGGCACCAGTCCAAGCAGTTATAAAGTTGCCATCAGGAGAGTTTGTTACTGGTTCAAGTGACAGTACTTTAAAGCTTTGGAGAGGAAAAACTTGCGTACATACCTTTGAAGGACATTCAGATACAGTTCGTGGCTTGTCTGTGATGTCTGGTCTTGGAATCCTATCTGCATCCCATGACGGTTCTCTTAGATTATGGGCAGTAAGTGGTGAAGTGTTAATGGAGATGGTTGGTCATACTGCTATTGTTTATTCAGTTGATTCACATGCATCGGGACTTATTGTCAGTGGTAGCGAAGATCGTTTTGCCAAAGTTTGGAAAGATGGAGTTTGTGTTCAGAGCATAGAACATCCTGGTTGTGTTTGGGATGCAAAGTTTATGGAAAATGGGGATATTGTGACAGCGTGTTCAGATGGAGTCGTACGCATTTGGACTGTAGATCAGAATAATGTTGCTGAACAGCAAGAGCTTGATTTATACACTTCACAACTTTCTCTATACAAATCTAGTAGGAAGAGGGTTGGAGGATTGAAATTAGAAGAGTTACCAGGCTTGGAGGCACTAAAGATCCCAGGAACAACTGATGGCCAGACAAAAATAGTGAGAGAGGGGGATAATGGGGTGGCATATGGATGGAACAAGAGAGAACAGAAGTGGGATAAAGTAATTCCCTCTGTTCTATATTTTGTGAATCAAATCGCCAACTATTCATTTCTTATAAACTTTGCCTGTGTTTATTCAGTGTTTGATGTGGATATTGGTGATGGTATGCCTATCCGTAAGCTGCCATACAATCGATCAGATAATCCATATGATGTTGCTGATAAATGGCTACTCAAGGAGAATCTTCCACTTTCTTTTCGTGAACAAGTTGTACAGTTCATTCTTCAAAATACCGGACAAAACAATGTTACTTTTGATGCCTCATTTCGTGATCCCTATACTGGCTCCCATGCTTACGTACCAGGACAACCTTCTCATTTGTCTGATATTTCTGCAAAACCCACTTTCAAGCATATTCCTAAGAAAGGGATGCTTGTTTTTGATGCTGCTCAGTTTGACGGGATCCTTAAAAAGATTATTGAGTTCAATAATGCATTACAATCTGACCAGGAAAAGCAGAACTTGTCTTTGACTGAGCTCAATGTTTCCAGACTGGGTGCCATTGTTAAAATTCTGAAAGATACTTCACATTATCATTCTAGTAAATTTGCAGACTCTGATATAGACTTGTTACTGAATCTGCTTCGATCATGGCCTATTGCAATGATATTTCCTGTCATTGATATGATAAGGATGATAGTTCTTCATCCAGATGGGGCTATTTTACTTAACAAGCATTTTGAAGCAGAAAACGACATTGTAGTGGAAGTGATTAAGAAAGTCACTGTAAGTCCGACAGTTCCTGCGAATCTGTTGACCAGCATTCGTGCTGTGACTAATCTCTTCAGGAATTCATGCTACTACAATTGGTTGCAGAAACATCGTAGTGAGATACTTGACGCTTTCTCAAGTTGTAGTTCATCTCCAAACAAAAATTTGCAGTTGTCATACTCTACCTTGTTACTAAATTATGCTGTGCTGTTGATTGAATCAAATGATCAAGAAGGTCAATCTCAAGTTCTATCAGCAGCTCTTGAGCTTGCCGAGGATGAAAATGTGGAAGTTGATTCCAAATTTCGTGCTTTGGTTGCTGTTGGATCTCTGATGCTTAAGGGTCTCGTCAGAAAAATAGCTCTGGATTTTGATGTTTTGAACATTGCAAAAGCAGCTAAGGGTTCTAAGGATGCCAAGATTGCTGAAGTCGGATCTGACATTGAGCTGTTAACAAAGCAGACCTGA 2274 0.4191 MMQKGFAFHLFQHTANVFVRGICVCGSEAIATSSRDRAVRLWSLDSNRKFVSSKILLGHTSFVGPLAWIPPNSEFPLGGIVSGGMDTLVFVWDLNTGETVHTLKGHQLQVTGIVFDEGDVVSSSVDCTLRRWRNGQTVETWEAHKAPVQAVIKLPSGEFVTGSSDSTLKLWRGKTCVHTFEGHSDTVRGLSVMSGLGILSASHDGSLRLWAVSGEVLMEMVGHTAIVYSVDSHASGLIVSGSEDRFAKVWKDGVCVQSIEHPGCVWDAKFMENGDIVTACSDGVVRIWTVDQNNVAEQQELDLYTSQLSLYKSSRKRVGGLKLEELPGLEALKIPGTTDGQTKIVREGDNGVAYGWNKREQKWDKVIPSVLYFVNQIANYSFLINFACVYSVFDVDIGDGMPIRKLPYNRSDNPYDVADKWLLKENLPLSFREQVVQFILQNTGQNNVTFDASFRDPYTGSHAYVPGQPSHLSDISAKPTFKHIPKKGMLVFDAAQFDGILKKIIEFNNALQSDQEKQNLSLTELNVSRLGAIVKILKDTSHYHSSKFADSDIDLLLNLLRSWPIAMIFPVIDMIRMIVLHPDGAILLNKHFEAENDIVVEVIKKVTVSPTVPANLLTSIRAVTNLFRNSCYYNWLQKHRSEILDAFSSCSSSPNKNLQLSYSTLLLNYAVLLIESNDQEGQSQVLSAALELAEDENVEVDSKFRALVAVGSLMLKGLVRKIALDFDVLNIAKAAKGSKDAKIAEVGSDIELLTKQT 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01467 757 ProSitePatterns Trp-Asp (WD) repeats signature. 80 94 IPR019775 -
Vian5g01467 757 SMART WD40_4 252 289 IPR001680 GO:0005515
Vian5g01467 757 SMART WD40_4 173 211 IPR001680 GO:0005515
Vian5g01467 757 SMART WD40_4 96 133 IPR001680 GO:0005515
Vian5g01467 757 SMART WD40_4 213 251 IPR001680 GO:0005515
Vian5g01467 757 SMART WD40_4 49 93 IPR001680 GO:0005515
Vian5g01467 757 SMART WD40_4 4 43 IPR001680 GO:0005515
Vian5g01467 757 SMART WD40_4 134 172 IPR001680 GO:0005515
Vian5g01467 757 FunFam Polyubiquitin binding protein (Doa1/Ufd3) 3 308 - -
Vian5g01467 757 SUPERFAMILY WD40 repeat-like 8 300 IPR036322 GO:0005515
Vian5g01467 757 ProSiteProfiles Trp-Asp (WD) repeats profile. 141 171 IPR001680 GO:0005515
Vian5g01467 757 Gene3D - 482 753 IPR011989 -
Vian5g01467 757 FunFam Phospholipase A-2-activating protein isoform A 482 754 - -
Vian5g01467 757 Pfam PFU (PLAA family ubiquitin binding) 335 446 IPR015155 -
Vian5g01467 757 PRINTS G protein beta WD-40 repeat signature 80 94 IPR020472 -
Vian5g01467 757 PRINTS G protein beta WD-40 repeat signature 198 212 IPR020472 -
Vian5g01467 757 PRINTS G protein beta WD-40 repeat signature 30 44 IPR020472 -
Vian5g01467 757 ProSiteProfiles PUL domain profile. 482 753 IPR013535 -
Vian5g01467 757 PANTHER PHOSPHOLIPASE A-2-ACTIVATING PROTEIN 18 711 - -
Vian5g01467 757 CDD WD40 13 288 - -
Vian5g01467 757 Gene3D - 5 307 IPR015943 GO:0005515
Vian5g01467 757 ProSiteProfiles Trp-Asp (WD) repeats profile. 30 52 IPR001680 GO:0005515
Vian5g01467 757 ProSiteProfiles Trp-Asp (WD) repeats profile. 180 210 IPR001680 GO:0005515
Vian5g01467 757 Pfam PUL domain 484 749 IPR013535 -
Vian5g01467 757 ProSiteProfiles PFU domain profile. 355 453 IPR015155 -
Vian5g01467 757 ProSiteProfiles Trp-Asp (WD) repeats profile. 220 251 IPR001680 GO:0005515
Vian5g01467 757 Pfam WD domain, G-beta repeat 254 288 IPR001680 GO:0005515
Vian5g01467 757 Pfam WD domain, G-beta repeat 216 251 IPR001680 GO:0005515
Vian5g01467 757 Pfam WD domain, G-beta repeat 97 132 IPR001680 GO:0005515
Vian5g01467 757 Pfam WD domain, G-beta repeat 175 210 IPR001680 GO:0005515
Vian5g01467 757 Pfam WD domain, G-beta repeat 135 171 IPR001680 GO:0005515
Vian5g01467 757 Gene3D - 390 451 IPR038122 -
Vian5g01467 757 ProSiteProfiles Trp-Asp (WD) repeats profile. 56 102 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01467 Vian-Chr5 37244857 37259112 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01467 19 756 Acyl Lipid Metabolism Gene Families AT3G18860 68.016 0.0 1070
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01467 K14018 - gmx:100816481 1315.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01467 5 37244857 37259112 Vian5g01467 5 37244857 37259112 ECH