Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01449 ATGTTGAAAAAAATGGGTTTTGAAGAAGAAGCAGTTGTGCAATTGATCAATTCTGATTTCAGAGACCTAAGTGTAGCTGCTAATCAATTAGCCAATCACGTGGTCAAACTTGGTGGCATAGGCTTTGGAGCTTCTTTTTTCGGATTGATTGCTGCCATTGCTGCTATTTATCTGTTAATTTTGGATCGTACAAACTGGAGGACTAATATTCTCACAGGACTACTCATTCCATATATTTTCTTCAGCTTGCCTTCGATAATTTTTGCCGTCTTCAGGGGAGAGATTGGAAAATGGATTGCTGTTATTGCTGTTGTATTGCGCCTTTTCATTCCAAGACACTTCCCTGATTGGCTGGAATTGCCGGGTGCTTTGATTCTTCTTATCGTTGTAGCTCCTTCTCTATTTGCAAACACCTTTAGAAGCGACATTGTTGGGGTGGTAGTGTGTCTCATCATTGCATGCTATCTGCTGCAAGAACATATTCGGGCTTCTGGTGGTTTCAGAAACTCCTTCACTAAAGCCCATGGCATATCAAATTCCGTTGGCATAATACTTCTGTTGGTCTATCCCATCTGGGCGTTGGTGGTCATACTTTTTTAG 600 0.4133 MLKKMGFEEEAVVQLINSDFRDLSVAANQLANHVVKLGGIGFGASFFGLIAAIAAIYLLILDRTNWRTNILTGLLIPYIFFSLPSIIFAVFRGEIGKWIAVIAVVLRLFIPRHFPDWLELPGALILLIVVAPSLFANTFRSDIVGVVVCLIIACYLLQEHIRASGGFRNSFTKAHGISNSVGIILLLVYPIWALVVILF 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01449 199 PANTHER COLD-REGULATED 413 PLASMA MEMBRANE PROTEIN 2 10 196 IPR008892 GO:0016020
Vian5g01449 199 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 1 33 IPR015940 -
Vian5g01449 199 Pfam Cold acclimation protein WCOR413 8 186 IPR008892 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01449 Vian-Chr5 37116989 37119458 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01449 - - gmx:100811430 296.975